Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.8  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.0  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 202  YQIFQNLVFNTCINSIFENSMHRKQDKLMN 291
            Y I  +     CI   FEN  H++  K +N
Sbjct: 1595 YDILLDSFIEDCIRMFFENGNHQELRKFLN 1624


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 434 NEQQEKKDAKIVTNH 390
           N+Q++KKD  IVT H
Sbjct: 114 NKQEDKKDLHIVTQH 128


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 211 FQNLVFNTCINSIFENSMHRKQDKLMNMLY 300
           ++++VF T   SIF+N  H  + K  + L+
Sbjct: 25  WKSIVFRTQYESIFKNPKHHGEKKPFHCLF 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,514
Number of Sequences: 5004
Number of extensions: 32335
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)