Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine re...    27   6.2  
U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AY849796-1|AAW34234.1|  517|Caenorhabditis elegans acetylcholine...    27   8.1  

>U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 3 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 248 IELIQVLNTKF*NI*YNL*KVVYVNDFGMWLFLCLYII 135
           +  +  L  +F NI  NL +V +V    +W F+C+  I
Sbjct: 285 VSSLMALTFQFGNIVKNLPRVSFVKAIDLWFFVCVAFI 322


>U40948-4|AAA81730.2|  517|Caenorhabditis elegans Hypothetical
           protein F55D10.5 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 248 IELIQVLNTKF*NI*YNL*KVVYVNDFGMWLFLCLYII 135
           +  +  L  +F NI  NL +V YV    +W+ +CL  +
Sbjct: 311 VNSLLALTFQFGNIMRNLPRVSYVKALDVWMLVCLTFV 348


>AY849796-1|AAW34234.1|  517|Caenorhabditis elegans
           acetylcholine-gated chloride channelsubunit ACC-3
           protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 248 IELIQVLNTKF*NI*YNL*KVVYVNDFGMWLFLCLYII 135
           +  +  L  +F NI  NL +V YV    +W+ +CL  +
Sbjct: 311 VNSLLALTFQFGNIMRNLPRVSYVKALDVWMLVCLTFV 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,991,320
Number of Sequences: 27780
Number of extensions: 176662
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)