Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0723 + 5411327-5411929,5413290-5413721                           31   0.56 
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680...    28   5.2  

>02_01_0723 + 5411327-5411929,5413290-5413721
          Length = 344

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 229 YTSCAPMTPGVCAGGAALGDTPA 161
           YT   P  PG  A GAA G TPA
Sbjct: 38  YTPATPAAPGAAAAGAAAGATPA 60


>06_01_0888 +
           6805071-6805485,6806202-6806374,6806501-6806549,
           6806654-6806820,6806919-6807002,6807097-6807135
          Length = 308

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 255 AEQQARSTAQPIPEQLSFKEKMKMFALEAGDASTP 359
           AE++A++ A+P PE  + K+ M++   E G+   P
Sbjct: 106 AERKAKAPAEPKPESSAGKDSMEVDKKEEGNVRKP 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,922,197
Number of Sequences: 37544
Number of extensions: 130415
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)