Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)                    27   9.4  

>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +3

Query: 291 PEQLSFKEKMKMFALEAGDASTPKDKVKISRAQRDI 398
           PE L+FK+KMKMF     + STP  KVK S+  R++
Sbjct: 381 PESLAFKQKMKMF----NNESTPDQKVKTSKWHREM 412


>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
          Length = 841

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 222 EVYRDPRARRLAEQQARSTAQPI-PEQLSFKEKMKMF 329
           EV ++  ARR+AEQ+   TA+ +  EQ   ++  +MF
Sbjct: 633 EVLKEREARRVAEQERLQTARAVTAEQKKSRQADRMF 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,364
Number of Sequences: 59808
Number of extensions: 139539
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)