Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.       57   9e-09
AF003135-5|AAK18990.1|  678|Caenorhabditis elegans Hypothetical ...    57   9e-09
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ...    57   9e-09
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   3.5  
Z70285-3|CAE17840.1|  214|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
          Length = 1666

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
 Frame = +3

Query: 198  TPGVIGAQEVYRDPRARRLAEQQARSTAQ----PIPEQLSFKEKMKMFALEAGDASTPKD 365
            +PG++G  E+YRDPR RRL E Q R+ +         +L F++K ++FA + G+ + P+ 
Sbjct: 1579 SPGIVGTNEIYRDPRQRRLNELQDRNRSSENGAADGAKLGFRDKQRLFARQIGEDTAPRQ 1638

Query: 366  KVKISRAQRDID 401
            ++  S AQR I+
Sbjct: 1639 RMNESSAQRLIE 1650


>AF003135-5|AAK18990.1|  678|Caenorhabditis elegans Hypothetical
           protein W03F11.6b protein.
          Length = 678

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
 Frame = +3

Query: 198 TPGVIGAQEVYRDPRARRLAEQQARSTAQ----PIPEQLSFKEKMKMFALEAGDASTPKD 365
           +PG++G  E+YRDPR RRL E Q R+ +         +L F++K ++FA + G+ + P+ 
Sbjct: 597 SPGIVGTNEIYRDPRQRRLNELQDRNRSSENGAADGAKLGFRDKQRLFARQIGEDTAPRQ 656

Query: 366 KVKISRAQRDID 401
           ++  S AQR I+
Sbjct: 657 RMNESSAQRLIE 668


>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
            protein W03F11.6a protein.
          Length = 1658

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
 Frame = +3

Query: 198  TPGVIGAQEVYRDPRARRLAEQQARSTAQ----PIPEQLSFKEKMKMFALEAGDASTPKD 365
            +PG++G  E+YRDPR RRL E Q R+ +         +L F++K ++FA + G+ + P+ 
Sbjct: 1577 SPGIVGTNEIYRDPRQRRLNELQDRNRSSENGAADGAKLGFRDKQRLFARQIGEDTAPRQ 1636

Query: 366  KVKISRAQRDID 401
            ++  S AQR I+
Sbjct: 1637 RMNESSAQRLIE 1648


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 198 TPGVIGAQEVYRDPRARRLAEQQARSTAQPIP-EQLSFKEKMKMFALEAGDASTPKDKVK 374
           +P    A+   R PR RR    + + + +P P  +   KE + +     G A  P  K++
Sbjct: 112 SPRRSSARSPSRSPRRRRERSSERKQSEEPAPLPEKKKKEPLDILRTRTGGAYIPPAKLR 171

Query: 375 ISRAQ 389
           + + Q
Sbjct: 172 LMQQQ 176


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 198 TPGVIGAQEVYRDPRARRLAEQQARSTAQPIP-EQLSFKEKMKMFALEAGDASTPKDKVK 374
           +P    A+   R PR RR    + + + +P P  +   KE + +     G A  P  K++
Sbjct: 112 SPRRSSARSPSRSPRRRRERSSERKQSEEPAPLPEKKKKEPLDILRTRTGGAYIPPAKLR 171

Query: 375 ISRAQ 389
           + + Q
Sbjct: 172 LMQQQ 176


>Z70285-3|CAE17840.1|  214|Caenorhabditis elegans Hypothetical
           protein F56C4.3 protein.
          Length = 214

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = -2

Query: 499 WYWIIRDVLARWLLGT*FNILSSM*CLGHQRTASMSRCARDILTLSLGVEASPASSANIF 320
           W +++RDV+ +   GT  +I   +    HQ +   SR        ++  + S ASSAN+ 
Sbjct: 149 WRYLLRDVMKKIKAGTTADIAHRL----HQMSLDDSR---KYSLPAIQHKESNASSANVC 201

Query: 319 IFSLKESC 296
           +F  KE C
Sbjct: 202 VFFDKEYC 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,157,572
Number of Sequences: 27780
Number of extensions: 101297
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)