Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    31   0.47 
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ...    28   3.3  
At5g16150.3 68418.m01888 hexose transporter, putative strong sim...    28   4.4  
At5g16150.2 68418.m01887 hexose transporter, putative strong sim...    28   4.4  
At5g16150.1 68418.m01886 hexose transporter, putative strong sim...    28   4.4  

>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +3

Query: 213 GAQE--VYRDPRARRLAEQQARSTAQ-PIPEQLSFKEKMKMFALEAGDASTPK 362
           GA+E   Y   + +R +E +A+  AQ   PE+LSFKE +++FA E      PK
Sbjct: 645 GARENISYHKAQEQRQSEGRAKVQAQVDDPEELSFKEAVELFAQEKELLLKPK 697


>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
           significant) WD-40 repeats (PF0400); identical to WD-40
           repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 507

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 317 DEDVRARSRRRLHAQGQGQNIARATGHRRCTLMTQ 421
           D  VR   RR+L A G G  I +  GH+   L  Q
Sbjct: 359 DNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQ 393


>At5g16150.3 68418.m01888 hexose transporter, putative strong
           similarity to hexose transporter [Arabidopsis thaliana]
           GI:8347250; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 546

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 229 YTSCAPMTPGVCAGGAALGDT--PADDGLASMDSASSI 122
           Y S A   P  C+G  A+G T   AD+G+ S+ S SS+
Sbjct: 37  YKSLATTGPLYCSGSEAMGATLARADNGIQSVMSFSSV 74


>At5g16150.2 68418.m01887 hexose transporter, putative strong
           similarity to hexose transporter [Arabidopsis thaliana]
           GI:8347250; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 546

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 229 YTSCAPMTPGVCAGGAALGDT--PADDGLASMDSASSI 122
           Y S A   P  C+G  A+G T   AD+G+ S+ S SS+
Sbjct: 37  YKSLATTGPLYCSGSEAMGATLARADNGIQSVMSFSSV 74


>At5g16150.1 68418.m01886 hexose transporter, putative strong
           similarity to hexose transporter [Arabidopsis thaliana]
           GI:8347250; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 546

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 229 YTSCAPMTPGVCAGGAALGDT--PADDGLASMDSASSI 122
           Y S A   P  C+G  A+G T   AD+G+ S+ S SS+
Sbjct: 37  YKSLATTGPLYCSGSEAMGATLARADNGIQSVMSFSSV 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,732,069
Number of Sequences: 28952
Number of extensions: 93261
Number of successful extensions: 267
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)