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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               38   0.004
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         28   5.4  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   7.1  
SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)           27   9.4  
SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 27/63 (42%), Positives = 34/63 (53%)
 Frame = +2

Query: 263 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPX 442
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K  
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 443 GGG 451
           G G
Sbjct: 67  GFG 69



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +3

Query: 444 GEGYKGSKFHRVIKNFMIQGG*F 512
           G GYK S FHRVIKNFMIQGG F
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDF 89


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = +3

Query: 444 GEGYKGSKFHRVIKNFMIQGG*FYQG 521
           G GYKGS FHRVI  FM QGG F +G
Sbjct: 44  GFGYKGSSFHRVIPGFMCQGGDFTRG 69



 Score = 34.3 bits (75), Expect = 0.062
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +2

Query: 308 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPXGGG 451
           PK T+   FD++IG    G IV+ L    VPKT ENF  L     G G
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFG 46


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +3

Query: 444 GEGYKGSKFHRVIKNFMIQGG*FYQG 521
           G GYK S FHRVI++FMIQGG F +G
Sbjct: 86  GFGYKNSIFHRVIQDFMIQGGDFTKG 111



 Score = 34.7 bits (76), Expect = 0.047
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +2

Query: 263 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF 385
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLF 48


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +3

Query: 444 GEGYKGSKFHRVIKNFMIQGG*F 512
           G GYKGS FHR+I  FM QGG F
Sbjct: 178 GFGYKGSSFHRIIPQFMCQGGDF 200



 Score = 35.1 bits (77), Expect = 0.035
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +2

Query: 311 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPXGGG 451
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L     G G
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFG 180


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 453 YKGSKFHRVIKNFMIQGG*F 512
           Y G++FHRVI  FM+QGG F
Sbjct: 60  YAGTQFHRVIPGFMVQGGGF 79


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 NIGTIVIGLFGKTVPKTTENFFQL 427
           ++G I I L+GK  PK   NF QL
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQL 34


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 318 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 217
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 318 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 217
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


>SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)
          Length = 271

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 166 QNLRYKIRNLI*KPSQFTILLIRNNHT-VLSLASSVELDNG 47
           +N  Y ++NL  K S     L RNN   V  ++S VE D G
Sbjct: 95  KNFEYLVKNLRNKRSSLLHQLTRNNDVMVCQISSHVEQDKG 135


>SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 343 LHVKAHLMSNFRSFGNFIRFGTSDEQQN 260
           LH K   M+N  ++G F+  GT+D +QN
Sbjct: 68  LH-KTSGMTNRNAYGTFLTLGTTDNKQN 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,531
Number of Sequences: 59808
Number of extensions: 258434
Number of successful extensions: 415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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