BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS307B08f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07 SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04 SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001 SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 38 0.004 SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11 SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 28 5.4 SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05) 27 7.1 SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7) 27 9.4 SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 201 Score = 51.6 bits (118), Expect = 4e-07 Identities = 27/63 (42%), Positives = 34/63 (53%) Frame = +2 Query: 263 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPX 442 L+F+A +D VT KV D+ IG G +++GLFG T PKT NF LA K Sbjct: 8 LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66 Query: 443 GGG 451 G G Sbjct: 67 GFG 69 Score = 41.5 bits (93), Expect = 4e-04 Identities = 19/23 (82%), Positives = 19/23 (82%) Frame = +3 Query: 444 GEGYKGSKFHRVIKNFMIQGG*F 512 G GYK S FHRVIKNFMIQGG F Sbjct: 67 GFGYKDSIFHRVIKNFMIQGGDF 89 >SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 235 Score = 40.7 bits (91), Expect = 7e-04 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = +3 Query: 444 GEGYKGSKFHRVIKNFMIQGG*FYQG 521 G GYKGS FHRVI FM QGG F +G Sbjct: 44 GFGYKGSSFHRVIPGFMCQGGDFTRG 69 Score = 34.3 bits (75), Expect = 0.062 Identities = 21/48 (43%), Positives = 25/48 (52%) Frame = +2 Query: 308 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPXGGG 451 PK T+ FD++IG G IV+ L VPKT ENF L G G Sbjct: 2 PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFG 46 >SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 253 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = +3 Query: 444 GEGYKGSKFHRVIKNFMIQGG*FYQG 521 G GYK S FHRVI++FMIQGG F +G Sbjct: 86 GFGYKNSIFHRVIQDFMIQGGDFTKG 111 Score = 34.7 bits (76), Expect = 0.047 Identities = 20/41 (48%), Positives = 25/41 (60%) Frame = +2 Query: 263 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF 385 L F+AS+ + K P VT KV FD+ IG + G I IGLF Sbjct: 12 LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLF 48 >SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) Length = 298 Score = 38.3 bits (85), Expect = 0.004 Identities = 16/23 (69%), Positives = 17/23 (73%) Frame = +3 Query: 444 GEGYKGSKFHRVIKNFMIQGG*F 512 G GYKGS FHR+I FM QGG F Sbjct: 178 GFGYKGSSFHRIIPQFMCQGGDF 200 Score = 35.1 bits (77), Expect = 0.035 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +2 Query: 311 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPXGGG 451 +V +V FD+ IG+ + G IV+ L VP T ENF L G G Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFG 180 >SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 251 Score = 33.5 bits (73), Expect = 0.11 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +3 Query: 453 YKGSKFHRVIKNFMIQGG*F 512 Y G++FHRVI FM+QGG F Sbjct: 60 YAGTQFHRVIPGFMVQGGGF 79 >SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) Length = 454 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 356 NIGTIVIGLFGKTVPKTTENFFQL 427 ++G I I L+GK PK NF QL Sbjct: 11 SVGDIDIELWGKETPKACRNFIQL 34 >SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 135 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 318 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 217 VTL PL +S+ ++N + A+VRV I SL Sbjct: 38 VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71 >SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05) Length = 410 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 318 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 217 VTL PL +S+ ++N++ A+VRV I SL Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369 >SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7) Length = 271 Score = 27.1 bits (57), Expect = 9.4 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -2 Query: 166 QNLRYKIRNLI*KPSQFTILLIRNNHT-VLSLASSVELDNG 47 +N Y ++NL K S L RNN V ++S VE D G Sbjct: 95 KNFEYLVKNLRNKRSSLLHQLTRNNDVMVCQISSHVEQDKG 135 >SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 114 Score = 27.1 bits (57), Expect = 9.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 343 LHVKAHLMSNFRSFGNFIRFGTSDEQQN 260 LH K M+N ++G F+ GT+D +QN Sbjct: 68 LH-KTSGMTNRNAYGTFLTLGTTDNKQN 94 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,463,531 Number of Sequences: 59808 Number of extensions: 258434 Number of successful extensions: 415 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 415 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -