Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307B06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 77 1e-15
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 28 0.97
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 0.97
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.3
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 2.2
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 3.0
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 25 5.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.8
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 9.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 9.0
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 77.4 bits (182), Expect = 1e-15
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Frame = +3
Query: 69 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 245
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L +
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58
Query: 246 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 425
F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 59 SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118
Query: 426 DTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAG 521
+ + +++ + D + ++G+LAG
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAG 148
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 163 PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 255
P L + P AGS P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 0.97
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +3
Query: 156 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 335
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 336 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 485
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 354 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 458
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 165 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 314
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 3.0
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +3
Query: 6 APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 167
APIC EF+ Y F L T + YA G N S YH G D+ +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342
Query: 168 SESGVEFTSGITSNQESGKVFGSLS 242
+E+ + T+G + ++SG GS S
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGSNS 367
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 212 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 105
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 303 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 401
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 189 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 314
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/91 (21%), Positives = 35/91 (38%)
Frame = +3
Query: 81 YYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVK 260
Y + K+ + +K F K D + + I ++ +V L+S FA
Sbjct: 378 YLSKSEKETSSDKTKESKFAAKKRDFELSRFDYYSYMQDINGGRKGQEVLSVLTS-FAAN 436
Query: 261 DYGLTFTEKWNTDNTLATDITIQDKIAAGLK 353
DY L + + D + I +QD + K
Sbjct: 437 DYNLIHSSLTDIDALRPSIIQLQDIVTEANK 467
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +3
Query: 153 DLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQD 332
D + SESGV+ S T Q + V + +Y T + + + +I I D
Sbjct: 4560 DKQFSSESGVQMFSHFTFEQSNTNVLALADASMKCFNYANTASHHRSNSDIRQLEIIISD 4619
Query: 333 KI 338
I
Sbjct: 4620 GI 4621
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 204 SNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 305
SNQ K+ +L+ + K + + K DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,959
Number of Sequences: 5004
Number of extensions: 40887
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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