Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    62   3e-10
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    30   0.98 
01_06_1545 + 38144624-38145301                                         29   2.3  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   5.2  
05_03_0373 - 13194723-13195847,13196219-13196809                       28   5.2  
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964           27   9.1  
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269...    27   9.1  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 44/142 (30%), Positives = 74/142 (52%)
 Frame = +3

Query: 69  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 248
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG L ++
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 249 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 428
             +K+  LT   K N+++ L T +T+ +    GLK  L      Q   ++GKL+  + ++
Sbjct: 58  --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112

Query: 429 TVAVNTNLDLDLAGPVVDVAAV 494
              +N ++ L+ + P+V+++ V
Sbjct: 113 YAGINASVGLN-SNPMVNLSGV 133


>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 78  PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 251
           P Y   G +  D+ SK +H     LDL   S  + G++F SG+ S   +  V   L+ + 
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314

Query: 252 AVKDYGLTFTEKWNTDNT 305
           A+KDY    T+  N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332


>01_06_1545 + 38144624-38145301
          Length = 225

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = -2

Query: 511 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 356
           QP   +TAA+S++ P  SRSK+   +   TVS      E  N    V+VP   A  P+RV
Sbjct: 29  QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88

Query: 355 TLRPA 341
            +  A
Sbjct: 89  VVSDA 93


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 418 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 290
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 366 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 464
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
          Length = 586

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 213 ESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEG 368
           + G   G+ S++ ++KD  L F +   TD  L+  + + DKI   + V L+G
Sbjct: 304 QGGNNNGNFSNQPSLKD--LVFAQAETTD-ALSKKLAVNDKILENINVKLDG 352


>01_06_0332 +
           28522797-28523536,28525035-28525067,28525956-28526942,
           28527153-28527282
          Length = 629

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 135 FGVFKLDLKTKSE---SGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE 284
           FG+ KL    +S    +G   T G  + +   K FG++SSK  V  YG+   E
Sbjct: 444 FGMAKLCANKESIVSIAGARGTIGYIAPEVYSKQFGAISSKSDVYSYGMMILE 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,657
Number of Sequences: 37544
Number of extensions: 277487
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)