Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                    171   3e-43
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 31   0.76 
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   1.3  
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)                29   2.3  
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   28   5.4  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_18980| Best HMM Match : DUF274 (HMM E-Value=5.6)                    27   9.4  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score =  171 bits (416), Expect = 3e-43
 Identities = 75/149 (50%), Positives = 107/149 (71%)
 Frame = +3

Query: 75  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 254
           P  Y DLGK+A DVF KGY FG  K+DLKT +++GVEF +  +S  ++GKVFGSL +K+ 
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYK 159

Query: 255 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 434
             DYG++ +EKW TDN L+++IT++D+IA GLK+  + TFAP TG K+ K+KT++  D +
Sbjct: 160 YSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYL 219

Query: 435 AVNTNLDLDLAGPVVDVAAVLNYQGWLAG 521
               ++D D AGP V  +AV+ Y+GW AG
Sbjct: 220 HATGDVDFDFAGPTVQGSAVVGYEGWHAG 248


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -2

Query: 469 PAKSRSKLVFTATVSLVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSV 293
           P K     VF AT+ L + V N  V+   CG A+ P    L     ++ +V +++  LSV
Sbjct: 26  PVKGILLGVFAATI-LGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSV 84

Query: 292 FHFSVKVKP*SFTANLEERLPKTFPLSWLEVIP 194
            +  ++  P  F   L +   + +P+ +  VIP
Sbjct: 85  IYLELEYWPYGFRCKLSDIGYRPYPILFPIVIP 117


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 291 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 440
           +TD N L +D + +DK     K   E T    +   TGKL+T +  DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859


>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
          Length = 632

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 245 GGKAAKNLSAFLVGGDPAGEFN 180
           GG A   L  +LVGGDP  +FN
Sbjct: 389 GGGAGGELRYYLVGGDPQSQFN 410


>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 192 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 335
           SG+   +ESG+   SL+   A     L  T+  NTD T  TD T Q+K
Sbjct: 65  SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 337  ILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVNSTPDSLL 164
            + ++   S ANVL V+  SV +KP      LEE       L W +     ++TP++++
Sbjct: 871  LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---ASTTPETVI 925


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 372 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 509
           +AP    K  +L T F +DT AVN N    ++      +  +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 414 SFTNDTVAVNTNLDLDLAGPVVDVAAVLN 500
           ++TN   A++T     +AGPVV V+A LN
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLN 241


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 297  DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 446
            ++TLA +ITI  +  +A G  +  E TFAP+T TK  +   +    T    T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 303  TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLD 455
            T  T +  +  +AAG  V  +GTFAP T       +++F   T   + N+D
Sbjct: 1652 TPITSVANESTVAAGTTVLPDGTFAPGTNVAG---ESTFAPVTSVASENID 1699


>SB_18980| Best HMM Match : DUF274 (HMM E-Value=5.6)
          Length = 267

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 330 DKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVN 443
           D  ++  KVT EG+ A   G      KT + N T + N
Sbjct: 115 DGKSSDAKVTSEGSVATYAGLTADSFKTRYNNHTASFN 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,522
Number of Sequences: 59808
Number of extensions: 314401
Number of successful extensions: 880
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)