Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    48   3e-06
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    44   6e-05
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.27 
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   1.9  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   4.4  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    27   5.8  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    27   5.8  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    27   5.8  
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...    27   7.7  
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...    27   7.7  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 37/150 (24%), Positives = 75/150 (50%)
 Frame = +3

Query: 72  APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKF 251
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +  T  ++    FG +S+ +
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDISTLY 60

Query: 252 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 431
             K        K ++ ++++T +T+++ + +  K  +          K+GKL   + +  
Sbjct: 61  --KGQNTIVDLKIDSHSSVSTKVTLKNLLPSA-KAVISFKIPDH---KSGKLDVQYVHPH 114

Query: 432 VAVNTNLDLDLAGPVVDVAAVLNYQGWLAG 521
             +N+++ L+   P++D++A +  Q    G
Sbjct: 115 ATLNSSIGLN-PTPLLDLSATIGSQNVCLG 143


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 37/141 (26%), Positives = 68/141 (48%)
 Frame = +3

Query: 75  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 254
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS  T+ ++ G     +++++ 
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS--TALKKGGVHAADVATQYK 61

Query: 255 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 434
            K+    F  K +TD+++ T +T+ + I    K  +     P     + KL+  + +D  
Sbjct: 62  YKN--ALFDVKIDTDSSVLTTVTLTE-ILPSTK-AIASFKVPD--YNSAKLEVQYFHDHA 115

Query: 435 AVNTNLDLDLAGPVVDVAAVL 497
            V     L    P++D+ A L
Sbjct: 116 TVTAAAALK-QNPLIDITATL 135


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 75  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 209
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to desacetoxyvindoline
           4-hydroxylase [Catharanthus roseus][GI:1916643],
           flavonol synthase 1 [SP|Q96330]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 361

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 346 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 173
           PA +  ++V     V  +    +K  P  +   LEERL   F     E IP+++ S PD
Sbjct: 13  PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 63  TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGK 224
           T ++ P  ++ G+ A  +  K  +FG   LDL  K   +SG+  +S ITS   SGK
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGK 321


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 275 SQAIVFHCKFGGKAAKNLSAFLVGGDPAGEFNTRLAL 165
           S+AIV H +   K + NL  ++VG     +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 78  PYYADLGKKANDVFSKGYHFGVFKLDLKT 164
           P  +  G K N ++  GY+FGV+ L  KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 403 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 242
           FP+   V  A +P   T  PA +  W+V+S +  VL +  + + +   +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 386
           +W  D+   TDI++ D I  G++     TF P T
Sbjct: 24  RWTYDDVTVTDISLVDYI--GVQAAKHATFVPHT 55


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 386
           +W  D+   TDI++ D I  G++     TF P T
Sbjct: 24  RWTYDDVTVTDISLVDYI--GVQAAKHATFVPHT 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,050,856
Number of Sequences: 28952
Number of extensions: 224832
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)