Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0703 - 10535082-10536779                                         27   6.9  
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    27   9.1  

>03_02_0703 - 10535082-10536779
          Length = 565

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 498 YRNGGAGPVELIQLSPSLICISNFCIVSDYDNTKMTTFGSLTSSA 364
           ++NG +   E  +LS S+  I +FC   DY  T  TT      +A
Sbjct: 26  FKNGSSNAKEDGELSTSVKSIKSFCQPVDYRETCETTLEQTAGNA 70


>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 440 AYRTSASSQITTIPR*QHSEA*LPPPNALHP 348
           A R+S  S  + +P   H    LPPP   HP
Sbjct: 6   ALRSSVGSHSSALPPSYHHHRRLPPPQQQHP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,316
Number of Sequences: 37544
Number of extensions: 218785
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)