Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307B03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 29 0.32
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 29 0.56
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 29 0.56
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|... 27 1.7
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 25 5.2
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 6.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 6.8
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 9.0
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 25 9.0
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 25 9.0
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 9.0
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 217 RKRNNQGLHALKTPKYKFLTKEELELEIA 303
RK+ N L+ +KTPKY LTK L A
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTA 314
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 28.7 bits (61), Expect = 0.56
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 214 FRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVLLQIPPV-LKIHKPIDEVLSRD 390
F++ N LH++ FL ++LE + +A E+ +VLL + + IDE D
Sbjct: 273 FQRLQNSSLHSI------FLDPKQLEQKAQEAEERKNVLLNFDRTSAQRTRIIDEAADFD 326
Query: 391 PALIGYDT 414
P + DT
Sbjct: 327 PTSLASDT 334
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 0.56
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 92 LDITRTHGSYFIINVLTCFVAIFCNSKDIL 3
L ++R H YFI VL CF A FC + IL
Sbjct: 86 LGLSRLHVFYFIRGVLACFSA-FCETNLIL 114
>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 16 LLQKIATKHVKTLIIKYEPCVLVISNRKLNIVPSFYDGEQDPAPKFFT 159
+LQ++ + V TL + C + + LN++ DG PA +FFT
Sbjct: 59 ILQELRNQKV-TLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFFT 105
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 331 LQIPPVLKIHKPIDEVLSRDPALIG 405
LQ+ P L + IDEV DP LIG
Sbjct: 12 LQLLPALGLPSRIDEVDVSDPELIG 36
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 43 VKTLIIKYEPCVLVISNRKLNIVPSFYDGEQD 138
+ L+ K +PC V+ + IV SFY D
Sbjct: 206 ISLLLSKKQPCDFVVREVLVQIVHSFYKAHLD 237
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -1
Query: 257 GVLRACRP*LFLLRKTLVKSGRVNLFNRFCTFGVKNFGAGSCSPS*NDGTMFNFRL 90
G+ RP + L + + G ++++ + F V + G C + D F FRL
Sbjct: 385 GIASLARPKVCLFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDTGKFGFRL 440
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 191 LGQILLKFSARETIKVYMPLKLPNISFSRKKSLNWKLLKLMKKPMCF 331
+G + AR ++V+ + PN + + NW +++M +CF
Sbjct: 372 VGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCF 418
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 364 VCEFSGQEVFEEAHRLF 314
VC FSG +V+ A RLF
Sbjct: 5 VCSFSGSKVYPGAGRLF 21
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 364 VCEFSGQEVFEEAHRLF 314
VC FSG +V+ A RLF
Sbjct: 5 VCSFSGSKVYPGAGRLF 21
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 406 ILSKLGLLIKPHQWVCEFSGQ 344
++ KLG L P QWVC+++ +
Sbjct: 617 LIQKLGPL--PEQWVCQYAAE 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,620
Number of Sequences: 5004
Number of extensions: 47088
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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