Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38404| Best HMM Match : ComC (HMM E-Value=2.7)                      78   4e-15
SB_18402| Best HMM Match : ComC (HMM E-Value=2.7)                      78   4e-15
SB_40387| Best HMM Match : GrpE (HMM E-Value=0)                        27   7.1  
SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8)             27   9.4  
SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)                   27   9.4  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)                  27   9.4  

>SB_38404| Best HMM Match : ComC (HMM E-Value=2.7)
          Length = 237

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 42/120 (35%), Positives = 66/120 (55%)
 Frame = +1

Query: 151 FFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVL 330
           F   +V  +L+RLT  D  K+F  R      AL+   Y+ +T EEL      A  +A  +
Sbjct: 14  FNDESVNTILRRLTGCDVEKIFSNRKQ----ALEVHAYQLMTDEELLAAEEDAESRARSM 69

Query: 331 LQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRSCD 510
           L++PPV++  + I+EV+  D  L GYD++  +FTDI+    +  R I+ R+ DG LR  +
Sbjct: 70  LEMPPVMEEREEINEVIGTDERLAGYDSANLIFTDISMSATDRTRNIVVREPDGRLRKAN 129


>SB_18402| Best HMM Match : ComC (HMM E-Value=2.7)
          Length = 237

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 42/120 (35%), Positives = 66/120 (55%)
 Frame = +1

Query: 151 FFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVL 330
           F   +V  +L+RLT  D  K+F  R      AL+   Y+ +T EEL      A  +A  +
Sbjct: 14  FNDESVNTILRRLTGCDVEKIFSNRKQ----ALEVHAYQLMTDEELLAAEEDAESRARSM 69

Query: 331 LQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRSCD 510
           L++PPV++  + I+EV+  D  L GYD++  +FTDI+    +  R I+ R+ DG LR  +
Sbjct: 70  LEMPPVMEEREEINEVIGTDERLAGYDSANLIFTDISMSATDRTRNIVVREPDGRLRKAN 129


>SB_40387| Best HMM Match : GrpE (HMM E-Value=0)
          Length = 328

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = +2

Query: 215 SARETIKVYMPLKLPNISFSRKKSLNWKLLKLMKKPMCF 331
           + R+T++   P+    +S   +++L+++LL+ ++KP CF
Sbjct: 92  TGRKTLEKLFPVNTA-VSSLAEENLSYRLLETLRKPPCF 129


>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
 Frame = +1

Query: 229 NQGLHALKTPKYKFLTKEELELEIAKANEKADVLLQI-------PPVLKIHKPIDE 375
           ++G H L   K   + ++E E EIA A +KA+V+L +       PPVLKI + ID+
Sbjct: 97  SRGYHIL-LEKPMSVEEKECE-EIAMACQKANVILAVCHVLRYFPPVLKIKEIIDQ 150


>SB_55470| Best HMM Match : Nucleoplasmin (HMM E-Value=4.8)
          Length = 230

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  SYIQSKIEHCTIILRWRTRPGSKVFYTKCTESIKEIDSA 197
           +Y+   + HC  I+ W T   S+VF T  T ++  I  A
Sbjct: 87  TYLGLPMHHCASIITWVTPMESRVFQTTLTVAMVGIAPA 125


>SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)
          Length = 258

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 205 TKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVLLQI 339
           T  ++    +G    +     F+T ++L+LEI K +EKA +  +I
Sbjct: 206 TMCYKIYKAEGTFLQRLTNEAFVTLDDLDLEIEKCSEKAPIQREI 250


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 166  VQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELE 291
            V+ L KRL R      FRK+  Q   A K+ K +   KEE E
Sbjct: 968  VEKLSKRLNRVKIKNKFRKKTKQS--ARKSRKIRLKWKEEQE 1007


>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
          Length = 1022

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  SYIQSKIEHCTIILRWRTRPGSKVFYTKCTESIKEIDSA 197
           +Y+   + HC  I+ W T   S+VF T  T ++  I  A
Sbjct: 879 TYLGLPMHHCASIITWVTPMESRVFQTTLTVAMVGIAPA 917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,328
Number of Sequences: 59808
Number of extensions: 323480
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)