Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307B02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 163 6e-41
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 124 4e-29
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 48 4e-06
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 48 4e-06
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 48 5e-06
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 44 1e-04
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 42 3e-04
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 40 0.002
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 39 0.003
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 32 0.003
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093) 37 0.012
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021) 36 0.015
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 35 0.047
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 33 0.14
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 31 0.76
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 29 1.8
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 29 1.8
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 28 4.1
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069) 28 5.4
SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0) 27 7.1
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 27 7.1
SB_57429| Best HMM Match : zf-UBR1 (HMM E-Value=8.7) 27 7.1
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7) 27 9.4
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 163 bits (397), Expect = 6e-41
Identities = 74/150 (49%), Positives = 104/150 (69%)
Frame = +1
Query: 67 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDV 246
G V++ D+ F E+ NAGTKLVV DFTA+WC PC+ IAP + L K+ +AVFLK+DV
Sbjct: 7 GNVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEKYKQAVFLKIDV 66
Query: 247 DRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVA 426
D C + A+ QGV+AMPTF F++N+ K+D + G + LE+ ++++ G D E+ V
Sbjct: 67 DVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKWIG-DGEEDGAGCGVK 125
Query: 427 GHMDLITFITKSECECLNEADDHPLAQALT 516
GH+DL ++I KS CECLNE ++HPL ALT
Sbjct: 126 GHVDLNSYINKSGCECLNEDNEHPLNDALT 155
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 124 bits (299), Expect = 4e-29
Identities = 55/104 (52%), Positives = 72/104 (69%)
Frame = +1
Query: 67 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDV 246
G V+++D+ F E+ AG++LVV+DFTATWC PC+ IAP F L KF VFLKVDV
Sbjct: 8 GNVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMDVVFLKVDV 67
Query: 247 DRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQ 378
D+C TA + G+ AMPTF FY N+ KID L G + LENK+++
Sbjct: 68 DQCQLTAESCGIRAMPTFHFYHNKAKIDELRGADPGALENKIKE 111
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 82 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLP-AKFPRAVFLKVDVD 249
I+ A F + + N KLVV+DF A WC PC++I P F+++ +F F K+DVD
Sbjct: 15 IEERAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALEEFKDVFFAKIDVD 71
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 130 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVD 249
++ +DFTATWC PC+ I P FE++ +F KVDVD
Sbjct: 12 EVAAIDFTATWCGPCRMIGPKFEEMAKEFKGVKCAKVDVD 51
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 91 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFF----EQLPAKFPRAVFLKVDVDRCA 258
D++F++ +A G +++V+F A WC C+R+AP + E L P KVD
Sbjct: 545 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKNDPPVPLAKVDCTEAG 602
Query: 259 -DTASAQGVSAMPTFIFYRN 315
DT S GVS PT +RN
Sbjct: 603 KDTCSKYGVSGYPTLKIFRN 622
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 109 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRA---VFLKVDVDRCADTASAQG 279
E+ N G K +V+F A WC C+++AP +EQL + ++ + KVD D D S
Sbjct: 34 EVVN-GEKFALVEFYAPWCGHCKQLAPTYEQLGEAYTQSSDVIIAKVDADGDRDLGSRFD 92
Query: 280 VSAMPTFIFY-RNRTKIDRLEGG 345
V PT ++ + T + GG
Sbjct: 93 VKGFPTIKYFPKGSTTPEEYNGG 115
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 88 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAV-FLKVDVDRCADT 264
N +F T++ A VVDF A WC PC R AP +EQL V KV+ ++
Sbjct: 439 NSKNFFTDVL-ASEDAWVVDFYAPWCGPCMRFAPKYEQLAKMLKGKVRAAKVNCEQDYGL 497
Query: 265 ASAQGVSAMPTFIFYRNRTK 324
S + + PT Y T+
Sbjct: 498 CSEANIHSYPTVRLYLGSTR 517
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +1
Query: 142 VDFTATWCPPCQRIAPFFEQLPAKF--PRAVFLKVDVDRCADTASAQGVSAMPTFIFYRN 315
VDF A WCPPC R+ P + + F F VD + + + PT I Y N
Sbjct: 307 VDFFAPWCPPCMRLLPEYRKAARSFVGKPVGFGTVDCTVHSQLCHQYNIRSYPTTILYNN 366
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 109 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF-PRAVFLKVDVDRCADTASAQGVS 285
E+A K V V+F A WC C+++AP ++QL K+ A + +D A+ V
Sbjct: 396 EVARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKYKDHADIVVAKMDSTANEVEGVKVH 455
Query: 286 AMPTFIFYRNRTKIDRLEGGNT 351
+ PT ++ + GG T
Sbjct: 456 SFPTIKYFPKEGEAVDYNGGRT 477
Score = 35.1 bits (77), Expect = 0.035
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 115 ANAGTKLVVVDFTATWCPPCQRIAPFFEQLPA--KFPRAVFLKVDVDRCADTASAQ--GV 282
A A K V+V+F A WC C+ +AP + + K ++ VD A+T + V
Sbjct: 37 AVAANKHVLVEFYAPWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAETKLGEKFQV 96
Query: 283 SAMPTFIFYRNRTKIDRLEGGNT 351
PT F+++ K GG T
Sbjct: 97 QGYPTIKFFKD-GKPSEYAGGRT 118
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 127 TKLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVDRCADTASAQGVSAMPT 297
T+ V+V F A WC C+ P +E+ F P VF K+D + D + V+ PT
Sbjct: 164 TEHVLVMFYAPWCGHCKNAKPKYEKAAETFKDQPNRVFAKLDCTKFGDVCDKEEVNGYPT 223
Query: 298 FIFYRNRTKIDRLEGGNTT 354
+Y + +G T
Sbjct: 224 LRYYLYGKFVVEYDGDRVT 242
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 160 WCPPCQRIAPFFEQLPAKFPRAVFL-KVDVDRCADTASAQGVSAMPTFIFYRNRTKIDRL 336
WC PC+ + P + + A+ V L KVD+D + A GV+A+PT I + I++
Sbjct: 2 WCNPCKVLTPRLDAIIAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVINKF 61
Query: 337 EG 342
EG
Sbjct: 62 EG 63
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 133 LVVVDFTATWCPPCQRIAPFFEQLPAKF----PRAVFLKVDVDRCADTASAQGVSAMPTF 300
+++V+F A WC C+ +AP + + K P F K+D +D A VS PT
Sbjct: 80 IILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKMDATVASDIAQRFDVSGYPTL 139
Query: 301 IFYRNRT 321
+R T
Sbjct: 140 KIFRKGT 146
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 106 TEMANAGTKLVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKVDVDRCADTASA 273
TE+ N + L++V+F A WC C+++AP +E +L P VD ++ A
Sbjct: 187 TEVVNRES-LMLVEFFAPWCGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATIESELAQK 245
Query: 274 QGVSAMPTFIFYR 312
V PT +R
Sbjct: 246 YEVQGYPTLKVFR 258
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 91 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFL-KVDVDRCADTA 267
D +F+ E+ N+ L +V+F A WC CQR+AP + + + V + +D TA
Sbjct: 86 DTNFEKEVLNS-KDLWLVEFFAPWCGHCQRLAPEWAKAATELKGKVKVGALDATVHTVTA 144
Query: 268 SAQGVSAMPTF-IF---YRNRTKIDRLEGGNT 351
S V PT +F +N ++ +GG T
Sbjct: 145 SRYQVQGYPTIKVFAAGIKNSHSVEDYQGGRT 176
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +1
Query: 88 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKV--DVD 249
ND +F + + V+VDF A WC CQR++P F+ QL P F KV +D
Sbjct: 57 NDQNFNETIKK--NEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNNPSLRFAKVIYSID 114
Query: 250 RC 255
C
Sbjct: 115 EC 116
Score = 33.9 bits (74), Expect = 0.082
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +1
Query: 88 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF----PRAVFL-KVDVD- 249
+D++F E A K V+VDF A WC C+++AP ++ + + +V L KVD
Sbjct: 140 DDSNF--EPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKELLILSHNSVRLAKVDCSA 197
Query: 250 ---RCADTASAQGVSAMPTFIFYRNRTKIDRLEGGN 348
T V +PT + + ++ EG N
Sbjct: 198 NNMATKKTCKKYNVKFLPTIYLFHDGKFVEEFEGNN 233
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 32.3 bits (70), Expect(2) = 0.003
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 100 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLK 237
F ++++ L VV F A W P C ++ E+L + P F+K
Sbjct: 12 FDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK 57
Score = 25.4 bits (53), Expect(2) = 0.003
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 292 PTFIFYRNRTKIDRLEGGNTTVLENKVRQY 381
P F +N+ +DR++G N L KV +
Sbjct: 51 PHVNFIKNQKVVDRIDGANAPELTKKVEHH 80
>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 154 ATWCPPCQRIAPFFEQLPAKFPRAVFL-KVDVDRCADTASAQGVSAMPTFI 303
A WC PC+ + P + + A+ V L KVD+D + A GV+A+PT I
Sbjct: 46 ACWCNPCKVLTPRLDAIIAEQDGKVDLAKVDIDVMGELAFNFGVNAVPTVI 96
>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
Length = 148
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 130 KLVVVDFTATWCPPCQRIAP----FFEQLPAKFPRAVFLKVDVDR 252
K++ V F+A WCPPC++ P F+E+L + V + V DR
Sbjct: 26 KVIAVYFSAHWCPPCRQFTPILKDFYEELGGEEGDLVIIFVSSDR 70
>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
Length = 293
Score = 36.3 bits (80), Expect = 0.015
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 130 KLVVVDFTATWCPPCQRIAPFFE 198
K+V + F+A+WCPPCQ+ P +
Sbjct: 155 KVVAIYFSASWCPPCQKFTPLLK 177
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +1
Query: 91 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE 198
D++F++ +A G +++V+F A WC C+R+AP +E
Sbjct: 20 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYE 53
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 109 EMANAGT---KLVVVDFTATWCPPCQRIAP 189
E+ NAG K+V + F+A WCPPC+ P
Sbjct: 164 EVINAGDLKGKIVGIYFSAHWCPPCRAFTP 193
Score = 31.1 bits (67), Expect = 0.58
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +1
Query: 79 VIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAP----FFEQLPAKFPRA---VFLK 237
++ E + K+V + F+A WCPPC+ P F++ +K A VF+
Sbjct: 13 LVGKHGQISVESLSGEGKIVGLYFSAHWCPPCRGFTPKLVEFYQNYRSKTNNALEVVFIS 72
Query: 238 VDVD 249
D D
Sbjct: 73 SDKD 76
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 124 GTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 216
G+K V + F A W CQRI F+Q+ +F
Sbjct: 42 GSKFVFIFFYAPWDDHCQRILQIFDQVADEF 72
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 133 LVVVDFTATWCPPCQRIAPFFE-QLPAKFPRAVFLKVDVDRCADTAS 270
+++VDF A WC CQ + P E A + +F VD C D S
Sbjct: 39 IMLVDFYAPWCHHCQELLPQLEGAANALAAKGLFQFAKVD-CTDPRS 84
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 130 KLVVVDFTATWCPPCQ 177
K+ ++DF A+WC PC+
Sbjct: 178 KVTIIDFWASWCQPCR 193
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 123 WNQVSRCGLYSNLVSTVPKDCPF 191
W GLYS LV+TV +D PF
Sbjct: 475 WTNEGGRGLYSGLVATVARDAPF 497
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 130 KLVVVDFTATWCPPCQRIAPFFEQ 201
++++VDF A WC C + P +E+
Sbjct: 40 EVMLVDFYAPWCSDCDNLRPKYEK 63
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 142 VDFTATWCPPCQRIAPFFEQLPAKF 216
V F A WC C ++AP +E+L F
Sbjct: 111 VKFYAPWCIHCIKLAPIWERLAEDF 135
>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 415 NTVAGHMDLITFITKSECECLNEADDHPLAQALT 516
+TV D+ TF EC C D H L +T
Sbjct: 230 HTVTVRFDIDTFFIYRECSCFFYCDGHALGAGIT 263
>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
Length = 1117
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 305 KMNVGIALTP*ALAVSAHLSTSTLRNTALGNFAG 204
K++ G+AL P +L V HLS S N + N G
Sbjct: 30 KLSKGVALVPGSLRVGFHLSISGQANNTVVNNVG 63
>SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)
Length = 252
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 319 TKIDRLEGGNTTVLENKVRQY--YGSDVAEEDEDNTVAGHMDLITFITKSECECL 477
TK + EGGN + N+ Y Y + DED+ ++ + TF+++ E E L
Sbjct: 178 TKFGKTEGGNVWLDANRTSPYKFYQYWLNSSDEDS--EKYIKIFTFLSQKEIETL 230
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 234 EKYCSRKLCW*LLEKRGNPLARWTPSCCKV 145
EKYCSR+ C +KR + + CCKV
Sbjct: 365 EKYCSRRAC----KKREDEASYMESCCCKV 390
>SB_57429| Best HMM Match : zf-UBR1 (HMM E-Value=8.7)
Length = 122
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -3
Query: 309 VENECGHCTDALSTRCIGASVYVYFEKYCSRKLCW 205
+ + CG+ D L RC + C RK CW
Sbjct: 24 LRDTCGYSRDKLVFRCNALDQVWFSVAQCRRKRCW 58
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 170 RAKGLPLFSSSYQQSFREQYFSK*T*TDAPIQRVLRASVQCPHSFSTETGPKSTD 334
+ K + ++S +EQ+ + AP++RV+ +V P + ++GPK D
Sbjct: 276 KVKAKSFLLNEKERSLKEQFMQRQDKKSAPVRRVVMPTV-IPTQGTQQSGPKPDD 329
>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1249
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 90 ILNYSG*AHGLKQIQSEVLINSKLGYVYRR 1
+LN++G GL +Q +N +GY+Y R
Sbjct: 387 LLNFAGTPKGLLMLQQTGTMNECVGYMYER 416
>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
Length = 540
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 201 LLEKRGNPLARWTPSCCKVHND*LGSSVSHFSLEMSIIL 85
L+ R NP W P CC + + S ++F+LE S+ L
Sbjct: 350 LIRFRSNP---WDPGCCWIGMNDSSYSGAYFNLEASVNL 385
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 295 TFIFYRNRTKIDRLEGGNTTV 357
TFIF+ N + I++LE +TT+
Sbjct: 1010 TFIFFSNASNINKLEPNSTTI 1030
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,759
Number of Sequences: 59808
Number of extensions: 259766
Number of successful extensions: 718
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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