Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307B01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 54 2e-08
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 49 5e-07
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 44 2e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 42 7e-05
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 7e-04
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.003
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.003
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 36 0.005
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 34 0.015
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 33 0.026
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.026
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 32 0.045
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.079
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.10
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.10
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.18
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.24
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 30 0.24
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.24
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.32
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 1.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 1.7
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 1.7
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 2.2
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 3.0
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 3.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.2
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 5.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 9.0
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 9.0
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 9.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 9.0
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 9.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 9.0
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +3
Query: 99 ITDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCR 278
I D + + + + L CPIC + L++ TT C H +C +C++ L+ +K CPTCR
Sbjct: 66 IPDTKTLLETFQKIKKTLECPICTEALQRPFTT-HCGHTYCYECLLNWLKE-SKSCPTCR 123
Query: 279 KKLVSKRS 302
+KL ++ S
Sbjct: 124 QKLYTQPS 131
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 48.8 bits (111), Expect = 5e-07
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +3
Query: 57 ELSLYELHRTPQEVITDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCII 236
+++ +E +++ + +T + P ++ L C +C + + T C FC +CI
Sbjct: 251 DVASWETYQSRKAALTANDVYKMQPPNI--SLACTLCKKLARNACRTPCCDKLFCEECIQ 308
Query: 237 TALRSGNKECPTCRKKLVSKRSLRPD 314
TAL + ECP C +K V +L PD
Sbjct: 309 TALLDSDFECPNCHRKDVLLDTLNPD 334
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 144 SELMCPICLDMLKKTMTTKECLHRFCNDCIITAL--RSGNKECPTCRKKL 287
++ C ICLD + ++ C H FCN CI++AL + ++CP CR+K+
Sbjct: 202 ADYKCVICLDS-PENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 41.5 bits (93), Expect = 7e-05
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 147 ELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVS 293
EL C IC ML + + C H FC C++ AL + + +CPTCR L S
Sbjct: 166 ELECQICFGMLYDPVVSP-CGHTFCGPCLMQAL-TQSPQCPTCRFGLPS 212
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.3 bits (85), Expect = 7e-04
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +3
Query: 126 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCR 278
S + L S L C IC + + + T C H FC+ CI LR + CP CR
Sbjct: 19 SLKGLDSSLRCLICHEYFRAPLITS-CSHTFCSFCIRDYLRE-HPMCPACR 67
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 156 CPICL---DMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSLRPDP 317
C +CL ++ + K+C H F +CI L S CP CR K V+ S P
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVASASTPSSP 581
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +3
Query: 156 CPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDLLI 335
C IC ++ K + C H FC C+I + CP CR K V K R + +
Sbjct: 360 CAICSNVAYKPVRLG-CSHVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNF 418
Query: 336 SKIYPSRDEYEAHQE 380
K Y R+ E +E
Sbjct: 419 MKTYFPREIKEKFEE 433
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +3
Query: 156 CPIC-----LDMLKKTMTTKECLHRFCNDCIITALRSGNKECPT--CRKKL 287
CP+C L+ K + EC H+ C C+ +G +CPT C K L
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKIL 63
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.015
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 153 MCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSL-RPDPNFDL 329
+C IC + + T C H FC C IT R + PTC + + L D NFD
Sbjct: 253 VCLICKKDYRSPIATT-CGHHFCEQCAITRYR----KTPTCIQCGADTKGLFSVDKNFDR 307
Query: 330 LISKIYPSRDE 362
L+ DE
Sbjct: 308 LLKNRKSKNDE 318
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 141 HSELMCPICLDML----KKTMTTKECLHRFCNDCIITALRSGNKECPT--CRKKLVSK 296
H+ + C C + L KK++ +C H FC+ C LR CP CRK++ K
Sbjct: 142 HNNIACAKCGNELVSDEKKSIFAAKCGHLFCSTC-AKELRKKTVPCPVQHCRKRITKK 198
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +3
Query: 135 SLHSELMCPICLDMLKKTMTTKE---CLHRFCNDCIITALRSGNKECPTCR 278
SL S C ICL+ ++ C H F CI L +GN CP CR
Sbjct: 759 SLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 32.3 bits (70), Expect = 0.045
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 147 ELMCPICL---DMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRK 281
++ CP+C+ D+ K +C +R C C N CP CR+
Sbjct: 15 DMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRR 62
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.079
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 120 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRS 251
AV+ L L C +C+D++ + + C H C +C+ + S
Sbjct: 734 AVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITS 777
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 186 TMTTKECLHRFCNDCIITALR-SGNKECPTCRKKL 287
T T +C H +C CI++ L+ N CP C+ ++
Sbjct: 207 TPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.1 bits (67), Expect = 0.10
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 84 TPQEVITDATEIAVSPRSLHSEL-MCPICLDMLKKTMT---TKECLHRFCNDCIITALRS 251
T Q+++ +++ S EL C +CL+ + ++T T C H F C+ +
Sbjct: 183 TEQQLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCL---QKW 239
Query: 252 GNKECPTCR 278
GN CP CR
Sbjct: 240 GNSSCPVCR 248
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/58 (24%), Positives = 22/58 (37%)
Frame = +3
Query: 102 TDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 275
T + A ++ + C +C K C H FC CI + + + CP C
Sbjct: 609 TGVSTSAEELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 150 LMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 275
L C +C K+ C H FC++C+ CP C
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 29.9 bits (64), Expect = 0.24
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 360 EYEAHQELVLAKLSMSHSQASLVNSITEGIKLQSQN 467
+Y + ++ A +SM+H+ L S+ E +L+S+N
Sbjct: 120 DYMGYSDMARANISMTHNTGDLTVSLEEASRLESEN 155
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 156 CPICLDML---KKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSL 305
CPIC + + ++ + C H C +R+ N CPTC K +++ SL
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRT-NYRCPTCYKTIINVNSL 322
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +3
Query: 156 CPICLDMLKK--TMTTKECLHRFCNDCIITALRSGNKECPTCRKKL 287
C ICL+ K + C H F CI + CPTC ++
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 138 LHSELMCPICLDMLKKTMTTKECLHRFCNDC 230
+H E C IC D + EC H FC C
Sbjct: 125 VHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +3
Query: 156 CPICLDMLKKT-----MTTKECLHRFCNDCIITALRSGN 257
CP C ++K MT K+C + FC C+ GN
Sbjct: 291 CPKCSTTIEKNGGCNHMTCKKCKYEFCWVCLGPWTEHGN 329
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Frame = +3
Query: 156 CPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKE------CPTCRKKLVSKRSLRP 311
CPIC + + C H C DC+ ++ + C TCR+ + +P
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKP 934
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 144 SELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRS 302
SE +C C +L + CLH DC + CP C+ + K++
Sbjct: 789 SEKVCDNCEGLLDVPFVSYSCLHLVHRDCATETV------CPKCKAGYLDKKN 835
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 129 PRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLV 290
PR++ MCP+C L K + F ND +I A N++ P ++ +
Sbjct: 452 PRTMSFSKMCPLCCTTLSKFV---RHFFMFLNDSVILATEV-NEKAPRFYRRFI 501
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 463 CDCNFMPSVIEL 428
C CNF+PSV++L
Sbjct: 380 CSCNFLPSVLDL 391
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 372 HQELVLAKLSMSHSQASLVNSITEGIKLQSQNRPQRSRKNHDESSNAS 515
H + H+ S + G+ L +QN P++S ESSN +
Sbjct: 177 HSTANVTSTGQEHAPDSSSTNSFGGLLLPNQNSPKKSELGETESSNTT 224
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 256 LPDLKAVIIQSLQNLWRHSFVVIVFLSISKQIG 158
L ++ V I Q LW F+V V LSI Q+G
Sbjct: 452 LSSIEIVFIWYAQILWYLVFIVSVILSIYFQLG 484
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +3
Query: 156 CPICLDMLKKTMTTKECLHRFCNDCII 236
CP CL+ C H +C C++
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLL 240
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 359 RIRGSPRTGSG*TKHVPFTSFSRQFYN 439
R+ G PR +++PF+ RQ YN
Sbjct: 157 RVVGPPRANETPGRNLPFSPILRQIYN 183
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 330 LISKIYPSRDEYEAHQELVLAKLSMSHSQASLVNSITEGIKLQSQNRPQR 479
+ISK D++ L SH ASL+NS+ +K + R
Sbjct: 47 MISKFQAPEDKFFPSFSLKSMPKQSSHMSASLLNSLNTSMKKSFSRKKYR 96
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 48 KTWELSLYELHRTPQEVITDATEIAVSPRSLHSE 149
K W ++ H +PQE+I + T ++ S++ +
Sbjct: 227 KLWNHKAFKSHVSPQELIQEVTVLSHKKYSINEQ 260
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 78 VTRKGIAPMFYFAKALLKTFCQYILN 1
VTR G +F K LL F +YILN
Sbjct: 457 VTRHGTRTIFGAFKDLLNCFRRYILN 482
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +3
Query: 48 KTWELSLYELHRTPQEVITDATEIAVSPRSLHSELMCPICL-DMLKKTMTTKE--CLHRF 218
K W+L E V+T A + + C ICL + +++ +E C H F
Sbjct: 466 KDWKLDKSESFDGQGNVVTTAERGS----KYFDQRECTICLCEYSEESPLYRELPCHHIF 521
Query: 219 CNDCIITALRSGNKECPTCRKKLVS 293
CI L + CP C++ + +
Sbjct: 522 HPACIDPYLLKNSDLCPLCKQSVTN 546
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 272 SRTLFVARSQSGYNTVVAESMEAFFCSHCLFEHIQTDWAHQLAVKTSWGDRYFRRVCDHF 93
SR+ ++S + E+ A LF+ QT+ +++V T W DR R+C HF
Sbjct: 501 SRSFITGNAKSISESFDQEAAAAIVARMALFK-CQTE--DEMSV-TRWIDRNLIRLCQHF 556
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Frame = +3
Query: 156 CPICLDMLKKTMTTKECLHRFCNDC--IITALRSGNK-------ECPTCRKKLV 290
C +CLD + C H C +C ++ + G+ +CP CR +V
Sbjct: 606 CSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIV 659
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,578
Number of Sequences: 5004
Number of extensions: 44063
Number of successful extensions: 197
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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