Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   5.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 138 LHSELMCPICLDMLKKTMTTKECLHRFCN 224
           LH +++C +C D+   +   +  L+ FC+
Sbjct: 19  LHGQVICFVCKDITSTSALYRLKLYLFCD 47


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 243 LRSGNKECPTCRKKLVSKRSLR 308
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = -1

Query: 188 CL-FEHIQTDWAHQLAVKTSWGDRYFRRVCDHFLWST 81
           CL F+H    +A        WG   F  +  H L  T
Sbjct: 277 CLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKT 313


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 134 KSSQRADVPNLFG-YAQKDNDYKRMPP*ILQRLYYN 238
           KS +   + +L   Y   +N+YK++     ++LYYN
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYN 110


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 134 KSSQRADVPNLFG-YAQKDNDYKRMPP*ILQRLYYN 238
           KS +   + +L   Y   +N+YK++     ++LYYN
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYN 110


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 134 KSSQRADVPNLFG-YAQKDNDYKRMPP*ILQRLYYN 238
           KS +   + +L   Y   +N+YK++     ++LYYN
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYN 110


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 95   SDHRRDGNSGLPTKSSQRADVPNLFG 172
            S H R G+  +P ++ + + VP+  G
Sbjct: 1770 SAHSRSGSQSMPRQNGRYSRVPSQGG 1795


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,695
Number of Sequences: 438
Number of extensions: 2918
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)