Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|... 194 9e-51
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 1.7
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 2.2
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 3.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 6.8
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.0
>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
Arc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 194 bits (472), Expect = 9e-51
Identities = 90/136 (66%), Positives = 114/136 (83%)
Frame = +3
Query: 114 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
M+ TL+PYL AVR TLTA++ LE FSS++VE+ ++PEVEV S E+LL P+V+SRN E+
Sbjct: 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 294 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 473
LIESS+NS+R SI IKQ DEIE+IL +KFM+F+M RAE+F +LRRKPV GY ISFLITN
Sbjct: 61 CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 474 FHTEQMYKHKLVDFVI 521
+HTE+M KHKLVDF+I
Sbjct: 121 YHTEEMLKHKLVDFII 136
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +3
Query: 342 KQADEIEKILCKKFMRFMMMRAENF--------IVLRRKPVDGYHISFLITNFHTEQMY 494
K+ D + IL +K + +M AE+ VL +K V + S + NFH +QM+
Sbjct: 500 KEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELANFHLKQMF 558
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 410 FSSHHHEPHKFFTKNFLYLIRLL 342
F+ H+HE +F K FLY+ + +
Sbjct: 353 FNEHYHEVMEFIEKLFLYIFKTI 375
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 392 EPHKFFTKNFLYLIRLLDHNT 330
E +KF T+NF ++ +LDH+T
Sbjct: 320 EKNKFKTENFKKVLEVLDHST 340
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 207 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 380
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 381 FMRFMMMRAE 410
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 429 RKPVDGYHISFLITNFHTEQMYKHKLVD 512
RK Y ++ + HT++M++HKLV+
Sbjct: 1646 RKEAGSYILNPSLDLKHTQEMFEHKLVE 1673
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 184 TFHPKLSRNTPSRRSKLEQAKNFYSI 261
+F+P+ R T R+ L+ A+N +++
Sbjct: 1221 SFYPQFPRTTQDNRAHLQAARNLWAL 1246
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1073
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 63 ERNLRCGVIFAKV*FSTMAATLKPYLTAVRHTLTAAMCLEHFSSQVV 203
+R L C + +V ST L+P LT V T T A+ H V+
Sbjct: 986 DRLLTCFKVEGEVCTSTREQMLQPILTTVSQTKTNAL-TNHLKYSVI 1031
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 153 HTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKE 248
H+LT L FS QV+E + E + ++ KE
Sbjct: 118 HSLTLQKTLSAFSDQVIEFHKNAERKRKSIKE 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,931
Number of Sequences: 5004
Number of extensions: 37935
Number of successful extensions: 127
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -