Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0675 + 35455968-35455970,35456314-35456379,35456513-354565...   195   2e-50
11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229     31   0.42 
01_01_1202 - 9681836-9683146                                           29   1.7  
08_02_0187 - 13978194-13979093,13980332-13980679                       29   2.3  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   2.3  
06_02_0189 - 12816751-12817088,12817272-12817330,12817745-128177...    27   6.9  
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197...    27   9.1  

>03_06_0675 +
           35455968-35455970,35456314-35456379,35456513-35456565,
           35457142-35457169,35457837-35457911,35458020-35458124,
           35458278-35458367,35458454-35458543
          Length = 169

 Score =  195 bits (475), Expect = 2e-50
 Identities = 91/136 (66%), Positives = 113/136 (83%)
 Frame = +3

Query: 114 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
           MA TL+ YLT +R+TL AAMCL++F  Q VE++ KPEVE++TS ELLLNPV+I RN  EK
Sbjct: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 294 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 473
            LIE+SINSIR+S+ +KQADE+E IL KKF+RF+ MRAE F VLRRKPV GY ISFLITN
Sbjct: 61  CLIETSINSIRISMKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 474 FHTEQMYKHKLVDFVI 521
           +H E M+KHKL+DF++
Sbjct: 121 YHCEDMHKHKLIDFIV 136


>11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229
          Length = 632

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 246 ELLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVL 425
           +LLLNP++ S+    KVL+ S   ++  ++  ++  ++E +    F+      A +  V+
Sbjct: 309 DLLLNPLLASQKGGSKVLVTSRSKTLPAALFCEEVIDLENMKDNDFLALFKHYAFSGAVI 368

Query: 426 RRKPVDG 446
           R   + G
Sbjct: 369 RDLQLHG 375


>01_01_1202 - 9681836-9683146
          Length = 436

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 490 ICSVWKLVIKKLIWYPSTGFLLNTMKFSALIIM 392
           + +V   V+  L +Y  TGFL N M+FSA  ++
Sbjct: 62  LVAVVTFVLVALYYYRCTGFLKNYMRFSAFFVL 94


>08_02_0187 - 13978194-13979093,13980332-13980679
          Length = 415

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 279 NSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMR 389
           N  + VL+++ +NS  V+  +K AD +      KF++
Sbjct: 294 NDRDSVLLDTKVNSASVTATVKDADPLAVYAISKFLQ 330


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 153  HTLTAAM-CLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
            H LT  + C+E   +  +E++     E+R SK  L    +I ++S+EK
Sbjct: 1154 HILTTLLPCIEEGVASYIEEFENMAEEIRLSKICLQESNIIGQSSSEK 1201


>06_02_0189 -
           12816751-12817088,12817272-12817330,12817745-12817773,
           12817808-12818013,12818245-12818329
          Length = 238

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = -1

Query: 473 VSNQKADMVPINWFPP*YNEVFSSHHHEPHKFFTKNFLYLIRLLDHNTHPN 321
           +S+   D++ + W P   N++      E      +NF+   + ++H+ +P+
Sbjct: 163 ISSTSIDLIQVRWVPREVNKMADKLAKEAKSGTRRNFIQNCQNIEHSAYPH 213


>10_08_0426 -
           17817975-17818582,17819068-17819209,17819648-17819745,
           17820070-17821897,17822331-17822738,17822891-17822943,
           17823461-17823877,17824401-17824605
          Length = 1252

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 177 LEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNE 290
           L+HF ++ +  Y +  + V +SKELL  P  I+R+ +E
Sbjct: 845 LDHFMNRSLSPYYRSALSVISSKELL-RPPFINRDFHE 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,301,621
Number of Sequences: 37544
Number of extensions: 206968
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)