Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)             238   2e-63
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14406| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)            28   4.1  
SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               27   7.1  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             27   7.1  

>SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score =  238 bits (582), Expect = 2e-63
 Identities = 114/136 (83%), Positives = 125/136 (91%)
 Frame = +3

Query: 114 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
           MAATL+PYL AVR TLTAAMCLE+F SQVVE++ KPEVEVR+SKELLL P+VISRN  EK
Sbjct: 1   MAATLRPYLNAVRSTLTAAMCLENFDSQVVERHNKPEVEVRSSKELLLTPLVISRNEKEK 60

Query: 294 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 473
           VLIE SINS+R+SI +KQADEIEKILCKKFMRFMMMRAENF VLRRKPV+GY ISFLITN
Sbjct: 61  VLIEGSINSMRISIAVKQADEIEKILCKKFMRFMMMRAENFFVLRRKPVEGYDISFLITN 120

Query: 474 FHTEQMYKHKLVDFVI 521
           FHTEQM+KHKLVDFVI
Sbjct: 121 FHTEQMFKHKLVDFVI 136


>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +3

Query: 213 TKPEVEVRTSKELLL---NPVVISRNSN---EKVLIESSINSIRVSIMIKQADEIEKILC 374
           T+ E E++T +E+     N   +   SN   EKV   + I+   +S+ +K+ DE+E+   
Sbjct: 31  TRKEDEMQTKEEIETKYENNKTVHGESNLEFEKVKSNAPIDKAEISVELKKRDEVERDYD 90

Query: 375 KKFMRF 392
           + F RF
Sbjct: 91  RLFTRF 96


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 141 LDTVLKLQPL*KIILSQRSRHTLSSFQFFSHEHRL 37
           LD  LKL P+  ++LS      L+  + +SHE+ L
Sbjct: 110 LDAALKLDPMEVLLLSDEDNPVLTGVKKWSHEYSL 144


>SB_14406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 213 TKPEVEVRTSKELLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRF 392
           TK E+E +      ++    S    EKV   + I+   +S+ +K+ DE+E+   + F RF
Sbjct: 3   TKEEIETKYENNKTVHGE--SNLEFEKVKSNAPIDKAEISVELKKRDEVERDYDRLFTRF 60


>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
          Length = 651

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
 Frame = +3

Query: 105 FSTMAATLKPYLTAVRHTLT----AAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVI 272
           F ++A+ L+P+LTA ++           L+     +++++ KP+V  + +  L L    +
Sbjct: 351 FESVASKLQPFLTAFQYDNPILPFLVSRLQKVIQSLMKRFIKPDVLQQANSPLKLAKFDL 410

Query: 273 SRNSN----EKVLIESSINS-IRVSIMIKQADEIEKILCKK--FMRF 392
           S   N    +KV +     + IR  ++ K+  E++ +L +K  F++F
Sbjct: 411 SNKENYLDAKKVDVGFVAQAKIRKLLLDKKVSELQAVLAQKEVFLKF 457


>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 180 EHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNS 284
           EH SS  V   T  E+  RT+  L    +V+S+N+
Sbjct: 781 EHISSVPVSVVTSTEIPARTNPPLNSEQIVLSKNA 815


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 111 TMAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKE--LLLNPVVISRNS 284
           T +  L  Y+ +   ++  A C +H SS+V+  YT  +V     ++  + + P    +++
Sbjct: 266 TSSKVLSTYVQSGVVSIRPARCCQHTSSKVLSAYTSSKVLSAYVQQGVVSIRPARCCQHT 325

Query: 285 NEKVL---IESSINSIR 326
           + KVL   ++  + SIR
Sbjct: 326 SSKVLSAYVQQGVVSIR 342


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 130 FKVAAIVENYTFAKI-TPHLKFLSI 59
           F++   VE+Y FAK   PH++F+SI
Sbjct: 41  FEITFWVESYVFAKFCPPHVQFISI 65


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 252 LLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEK 365
           L NPV IS  SN+  L    ++S  + ++ ++ DE EK
Sbjct: 185 LANPVFISMTSNDPFLTAFELSS-ELEVIARREDEYEK 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,423
Number of Sequences: 59808
Number of extensions: 257304
Number of successful extensions: 511
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)