Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF019888-1|AAB71548.1| 168|Homo sapiens Arp2/3 complex 20 kDa s... 234 2e-61
AF006087-1|AAB64192.1| 168|Homo sapiens p20-Arc protein. 234 2e-61
AK024110-1|BAB14828.1| 156|Homo sapiens protein ( Homo sapiens ... 143 4e-34
BC012596-1|AAH12596.3| 78|Homo sapiens actin related protein 2... 92 1e-18
BC052988-1|AAH52988.1| 980|Homo sapiens retinoic acid induced 1... 30 5.7
AY317139-1|AAP84319.1| 983|Homo sapiens RAI14 isoform protein. 30 5.7
AF155135-1|AAF44722.1| 980|Homo sapiens novel retinal pigment e... 30 5.7
AB037755-1|BAA92572.1| 989|Homo sapiens KIAA1334 protein protein. 30 5.7
BC132736-1|AAI32737.1| 1843|Homo sapiens coiled-coil domain cont... 29 9.9
BC078168-1|AAH78168.1| 887|Homo sapiens CCDC88A protein protein. 29 9.9
BC041160-1|AAH41160.1| 501|Homo sapiens CCDC88A protein protein. 29 9.9
AB201172-1|BAE44387.1| 1870|Homo sapiens girdin protein. 29 9.9
AB125644-1|BAF44475.1| 1843|Homo sapiens PKB/Akt-binding protein... 29 9.9
>AF019888-1|AAB71548.1| 168|Homo sapiens Arp2/3 complex 20 kDa
subunit protein.
Length = 168
Score = 234 bits (572), Expect = 2e-61
Identities = 112/136 (82%), Positives = 123/136 (90%)
Frame = +3
Query: 114 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
M ATL+PYL+AVR TL AA+CLE+FSSQVVE++ KPEVEVR+SKELLL PV ISRN EK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 294 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 473
VLIE SINS+RVSI +KQADEIEKILC KFMRFMMMRAENF +LRRKPV+GY ISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 474 FHTEQMYKHKLVDFVI 521
FHTEQMYKHKLVDFVI
Sbjct: 121 FHTEQMYKHKLVDFVI 136
>AF006087-1|AAB64192.1| 168|Homo sapiens p20-Arc protein.
Length = 168
Score = 234 bits (572), Expect = 2e-61
Identities = 112/136 (82%), Positives = 123/136 (90%)
Frame = +3
Query: 114 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
M ATL+PYL+AVR TL AA+CLE+FSSQVVE++ KPEVEVR+SKELLL PV ISRN EK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 294 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 473
VLIE SINS+RVSI +KQADEIEKILC KFMRFMMMRAENF +LRRKPV+GY ISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 474 FHTEQMYKHKLVDFVI 521
FHTEQMYKHKLVDFVI
Sbjct: 121 FHTEQMYKHKLVDFVI 136
>AK024110-1|BAB14828.1| 156|Homo sapiens protein ( Homo sapiens
cDNA FLJ14048 fis, clone HEMBA1006650, weakly similar to
ARP2/3 COMPLEX 20 KD SUBUNIT. ).
Length = 156
Score = 143 bits (346), Expect = 4e-34
Identities = 74/111 (66%), Positives = 85/111 (76%)
Frame = +3
Query: 114 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 293
M ATL+PYL+AVR TL AA+CLE+FSSQVVE++ KPEVEVR+SKELLL PV ISRN EK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNGKEK 60
Query: 294 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDG 446
VLIE SINS+RVSI +KQADEIEKILC K RA + L +DG
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKLNSAGWPRAASRTCLSSLGLDG 111
>BC012596-1|AAH12596.3| 78|Homo sapiens actin related protein 2/3
complex, subunit 4, 20kDa protein.
Length = 78
Score = 91.9 bits (218), Expect = 1e-18
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = +3
Query: 384 MRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVI 521
MRF MMRAENF +LRRKPV+GY ISFLITNFHTEQMYKHKLVDFVI
Sbjct: 1 MRFTMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVI 46
>BC052988-1|AAH52988.1| 980|Homo sapiens retinoic acid induced 14
protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +3
Query: 117 AATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEV-RTSKELL-----LNPVVISR 278
+ ++ +L + TAA +E S + E EVEV + K+LL + ++ R
Sbjct: 727 SVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPR 786
Query: 279 NSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRK 434
+S EK ++SS+ S VS++ + E K K + +R+E V R K
Sbjct: 787 SSYEK--LQSSLES-EVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREK 835
>AY317139-1|AAP84319.1| 983|Homo sapiens RAI14 isoform protein.
Length = 983
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +3
Query: 117 AATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEV-RTSKELL-----LNPVVISR 278
+ ++ +L + TAA +E S + E EVEV + K+LL + ++ R
Sbjct: 730 SVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPR 789
Query: 279 NSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRK 434
+S EK ++SS+ S VS++ + E K K + +R+E V R K
Sbjct: 790 SSYEK--LQSSLES-EVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREK 838
>AF155135-1|AAF44722.1| 980|Homo sapiens novel retinal pigment
epithelial cell protein protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +3
Query: 117 AATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEV-RTSKELL-----LNPVVISR 278
+ ++ +L + TAA +E S + E EVEV + K+LL + ++ R
Sbjct: 727 SVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPR 786
Query: 279 NSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRK 434
+S EK ++SS+ S VS++ + E K K + +R+E V R K
Sbjct: 787 SSYEK--LQSSLES-EVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREK 835
>AB037755-1|BAA92572.1| 989|Homo sapiens KIAA1334 protein protein.
Length = 989
Score = 29.9 bits (64), Expect = 5.7
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +3
Query: 117 AATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEV-RTSKELL-----LNPVVISR 278
+ ++ +L + TAA +E S + E EVEV + K+LL + ++ R
Sbjct: 736 SVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPR 795
Query: 279 NSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRK 434
+S EK ++SS+ S VS++ + E K K + +R+E V R K
Sbjct: 796 SSYEK--LQSSLES-EVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREK 844
>BC132736-1|AAI32737.1| 1843|Homo sapiens coiled-coil domain
containing 88A protein.
Length = 1843
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 249 LLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLR 428
L +NP + S+ N+KV ++S+ +SI+++Q I+ + + +MM N +++
Sbjct: 53 LQINPKLESQRVNKKVNNDASLRMHNLSILVRQ---IKFYYQETLQQLIMMSLPNVLIIG 109
Query: 429 RKP 437
+ P
Sbjct: 110 KNP 112
>BC078168-1|AAH78168.1| 887|Homo sapiens CCDC88A protein protein.
Length = 887
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 249 LLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLR 428
L +NP + S+ N+KV ++S+ +SI+++Q I+ + + +MM N +++
Sbjct: 50 LQINPKLESQRVNKKVNNDASLRMHNLSILVRQ---IKFYYQETLQQLIMMSLPNVLIIG 106
Query: 429 RKP 437
+ P
Sbjct: 107 KNP 109
>BC041160-1|AAH41160.1| 501|Homo sapiens CCDC88A protein protein.
Length = 501
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 249 LLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLR 428
L +NP + S+ N+KV ++S+ +SI+++Q I+ + + +MM N +++
Sbjct: 53 LQINPKLESQRVNKKVNNDASLRMHNLSILVRQ---IKFYYQETLQQLIMMSLPNVLIIG 109
Query: 429 RKP 437
+ P
Sbjct: 110 KNP 112
>AB201172-1|BAE44387.1| 1870|Homo sapiens girdin protein.
Length = 1870
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 249 LLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLR 428
L +NP + S+ N+KV ++S+ +SI+++Q I+ + + +MM N +++
Sbjct: 53 LQINPKLESQRVNKKVNNDASLRMHNLSILVRQ---IKFYYQETLQQLIMMSLPNVLIIG 109
Query: 429 RKP 437
+ P
Sbjct: 110 KNP 112
>AB125644-1|BAF44475.1| 1843|Homo sapiens PKB/Akt-binding protein
protein.
Length = 1843
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 249 LLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLR 428
L +NP + S+ N+KV ++S+ +SI+++Q I+ + + +MM N +++
Sbjct: 53 LQINPKLESQRVNKKVNNDASLRMHNLSILVRQ---IKFYYQETLQQLIMMSLPNVLIIG 109
Query: 429 RKP 437
+ P
Sbjct: 110 KNP 112
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,971,474
Number of Sequences: 237096
Number of extensions: 1189781
Number of successful extensions: 2425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2425
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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