Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27510.1 68417.m03951 expressed protein  ; expression support...    29   2.5  
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron...    28   3.3  
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron...    28   3.3  
At5g26270.1 68418.m03135 expressed protein  ; expression support...    27   5.8  
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr...    27   5.8  

>At4g27510.1 68417.m03951 expressed protein  ; expression supported
           by MPSS
          Length = 677

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 135 YLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVIS 275
           ++ A     T  MC+E    +    +  P++ +  +  LLLNPV+ S
Sbjct: 238 FIIATSDEKTNQMCVERLYWKKGNAFRTPQISLSAAVSLLLNPVMFS 284


>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
           similarity to mitochondrial DnaJ protein (AtJ1)
           GI:564030 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
           region, PF00684: DnaJ central domain (4 repeats);
           identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
          Length = 427

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 187 FHPKLSRNTPSRRSKLEQAKNFYSIL 264
           FHP  +RN PS + K ++ +  Y  L
Sbjct: 75  FHPDTNRNNPSAKRKFQEIREAYETL 100


>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
           similarity to mitochondrial DnaJ protein (AtJ1)
           GI:564030 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
           region, PF00684: DnaJ central domain (4 repeats);
           identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
          Length = 408

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 187 FHPKLSRNTPSRRSKLEQAKNFYSIL 264
           FHP  +RN PS + K ++ +  Y  L
Sbjct: 75  FHPDTNRNNPSAKRKFQEIREAYETL 100


>At5g26270.1 68418.m03135 expressed protein  ; expression supported
           by MPSS
          Length = 305

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -2

Query: 517 TKSTNLCLY--ICSVWKLVIKKLIWYP--STGFLLNTMKF 410
           T+S +L  +  +CS WKL   +++ YP  S+G++   + F
Sbjct: 80  TRSVSLRFFTALCSPWKLAYSQILGYPLVSSGYVSQAITF 119


>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 144 AVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELL-LNPVVISRNSNEKVLIESSINS 320
           A++H       ++ +  Q  EK  +  V V+ S  +L  N    S +S++     SS N 
Sbjct: 164 AIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNL 223

Query: 321 IRVSIMIKQADEIEKILCKK 380
             + + +   D + KILC+K
Sbjct: 224 PEIEVRVSGKDVLIKILCEK 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,308,340
Number of Sequences: 28952
Number of extensions: 182805
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)