Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   3.0  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.0  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 178 PYLSALCPVEVDGESVGSCAVHRSNVTTTNISV 80
           PY S   PV++D  S  S A   +  TT++ S+
Sbjct: 98  PYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSL 130


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 285 VCRYS*SVLECSVCERNVKTLMY 217
           +CR+    L C +C+R+V  + Y
Sbjct: 47  ICRWMDQSLTCPICKRHVDCVFY 69


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 216 KVW*SLSTRDGRRLTCRRCAPSKLTGNRWGHAPSIDPMLRQQIFPLKFAQHRTASVNTHH 37
           K W  LST D  +     C PS+L      H P +  +L    + L+  Q +  + NT H
Sbjct: 74  KQWAELSTTDKEKTRRMFCTPSRL---NTAHRPEVFYLLECCTYILE--QMQVVTKNTSH 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,221
Number of Sequences: 5004
Number of extensions: 37918
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)