Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400...    31   0.42 
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044...    28   4.0  
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409...    28   5.2  
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823...    28   5.2  
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662...    27   9.1  

>07_03_0935 -
           22738221-22738328,22739207-22739237,22739901-22740095,
           22740693-22740782,22740900-22741037,22741959-22742108,
           22743589-22744766
          Length = 629

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 150 KLTGNRWGHAPSIDPMLRQQIFPLKFAQHRTASV 49
           K+   RWG+ P IDP L    F  KF +H   SV
Sbjct: 308 KVQQRRWGYYPGIDPHLGFNEFMEKFFEHGKCSV 341


>04_04_1584 +
           34601927-34602144,34603324-34603510,34604239-34604496,
           34604866-34604965,34608523-34608639,34608704-34608804,
           34609035-34610141
          Length = 695

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 82  RKYLLS*HWIYGRRMTPPIPRQLRRGTAPTSKASAV 189
           R ++ +  W+ GRR TPP PR+       +S +S +
Sbjct: 139 RHHIRARDWVSGRRETPPQPRRETAAVLLSSSSSPI 174


>07_03_1003 +
           23239829-23240121,23240257-23240349,23240785-23240993,
           23241585-23241729,23241809-23241881,23242165-23242311,
           23242411-23242536,23242653-23242712
          Length = 381

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 115 GRRMTPPIPRQL--RRGTAPTSKASAVAC 195
           G    PP+   L  RRGTAP++ A+A +C
Sbjct: 5   GAAARPPVATTLSARRGTAPSATAAAASC 33


>03_06_0763 +
           36081546-36081669,36081755-36082170,36082280-36082339,
           36082466-36083101
          Length = 411

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -3

Query: 240 RNVKTLMYKVW*SLSTRDGRRLTCRRCAPSKLTGNRWGHAPSIDP 106
           RN    M++ W SL     +R+  R   PS LTG  W HA S  P
Sbjct: 10  RNPCLTMHQPWASLLVHGIKRVEGRSW-PSPLTGRLWIHAASKVP 53


>04_04_1225 -
           31865556-31865590,31865687-31865734,31866179-31866262,
           31866336-31866395,31866589-31866642,31866747-31867710
          Length = 414

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 202 TEHTRRPTPYLSALCPVEVDGESVGSCAVHRSNVTTTNISVEIRTASHSKCQHTPRHL*N 23
           TEH   P P LSA+ P++     + SC       T   I     ++ H++     RHL N
Sbjct: 271 TEHVN-PQP-LSAVVPIKSGQPVLASCKEVAGGKTVNEIQTVSESSKHTEESSGERHLLN 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,694
Number of Sequences: 37544
Number of extensions: 239983
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)