Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32506| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_44565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)                 27   9.4  
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      27   9.4  

>SB_32506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 520 IVRFENIKTHAVRGGLTKTINDLFYKTRLLFLNI 419
           IV  E ++  A+R  L   I DL YK RLL LN+
Sbjct: 16  IVLLEKVERRAIRWILRSKIGDLSYKKRLLKLNL 49


>SB_44565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 136 SVGSCAVHRSNVTTTNISVEIRTASHSKCQH 44
           S GSC +++ N+   N S  +    ++KC+H
Sbjct: 293 SNGSCNINKYNINIVNSSGNVVIGDNAKCEH 323


>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
          Length = 341

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 220 H*CFNITFANGTFENGSRISTDNMF 294
           H  FN+  AN T +NGSR STD+ +
Sbjct: 7   HHHFNL--ANSTIQNGSRTSTDSSY 29


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 190 RRPTPYLSALCPVEVDGESVGSCAVHRSNVTTTNISVEIRTASHSK 53
           R+P P   A  P E+ G  V  C+   +  TT    V+I T   S+
Sbjct: 525 RKPLPRNDAFEPTELYGGMVAPCSSQEAAPTTVVDGVDIDTVGDSE 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,044,660
Number of Sequences: 59808
Number of extensions: 307447
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)