Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 201  LSTRDGRRLTCRRCAPSKLTGN-RWGHAPSIDP 106
            ++T + R+L  R  APS+ TG+   GH   + P
Sbjct: 1908 MTTEEMRKLIERNEAPSRQTGSGHGGHGGLLTP 1940


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 72  AQHRTASVNTHHGTCKTKYHSQ 7
           AQ +  +V  ++    TKYH Q
Sbjct: 707 AQQQVQAVRNYYANLYTKYHGQ 728


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 190 RRPTPYLSALCPVEVDGESVGSCAVHRSNVT 98
           ++PTP      P+ ++G  + +CA   S  T
Sbjct: 217 KKPTPVQKHALPIIMNGRDLMACAQTGSGKT 247


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 180 RLTCRRCAPSK 148
           RLTCR+C  S+
Sbjct: 372 RLTCRKCFKSR 382


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 41  CVLTLAVRCCANFNGNI 91
           C+L L    C  F GNI
Sbjct: 117 CMLELGHEVCGRFYGNI 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,441
Number of Sequences: 438
Number of extensions: 2733
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)