Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A08f
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 167 6e-43
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 165 3e-42
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 1.2
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 2.2
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 2.9
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 5.0
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 6.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 25 8.7
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 8.7
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.7
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 8.7
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 25 8.7
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 8.7
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 25 8.7
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 8.7
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 8.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 8.7
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 8.7
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 167 bits (407), Expect = 6e-43
Identities = 85/147 (57%), Positives = 97/147 (65%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M +S G R TR F R R HG LSTY+K YK GDIVDI+ NGA QKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TG VYNVT ++GV + K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KE K
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 421 AAGKTRQPEKTAQIPPKAAPQSSXGTE 501
A GKT Q + P KA S+ E
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNE 147
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 165 bits (401), Expect = 3e-42
Identities = 84/147 (57%), Positives = 96/147 (65%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M +S G R TR F R R HG LSTY+K YK GDIVDI+ NGA QKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TG VYNVT ++GV + K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KE K
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 421 AAGKTRQPEKTAQIPPKAAPQSSXGTE 501
A GKT Q + P A S+ E
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNE 147
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 1.2
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 301 RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAP 480
+GR IN E+ K +++ L+ + +R+L E A G QP A KAA
Sbjct: 52 KGRTTQSAINS--ENSDKEKYKKEILEIKEREQRMLAE--ALGLP-QPSALALTSSKAAN 106
Query: 481 QSSXGTEKN 507
+SS TEK+
Sbjct: 107 RSSTNTEKD 115
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 387 DSLKEVLSALGVLDMLNTDIDALRYNPSAXTLVDXH 280
D LK + G L+ ++ ID NP +D H
Sbjct: 337 DDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFH 372
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 432 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSAXTLVDXHTESM 268
+A SLG Q +L +LSA G M D+ + PS+ TL D +TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 310 IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQI 462
I+ K +NI++EH+ S Q L +E+ E GK E T+Q+
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGKRDIEEITSQL 856
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 6.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 320 SASISVLSMSSTPSADKTSLRE-SKRMRGY*RNPRLPARPVNLKRQPRSPL 469
S S +S SS S+++ S + K + R+PR ++ VN+KR R+ +
Sbjct: 24 SQSFDPMSSSSNSSSEENSDDDYEKTISSKKRHPRPNSKGVNVKRSRRNAI 74
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 433 TRQPEKTAQIPPKAA 477
T QPE T+Q+PP +A
Sbjct: 66 TNQPEPTSQVPPISA 80
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 432 LAGSLGFLQ*PLILFDSLKEVLSALGV 352
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 341 SMSSTPSADKTSLRE 385
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 391 ENERLLKEPKAAGKTRQPEKTAQIPPKAAP 480
+N K P+ +R ++ PPK+AP
Sbjct: 186 KNHNQSKNPQNRSNSRSKQRNKNAPPKSAP 215
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 118 RTHGXXPLSTYMKVYKXGDIVDIRG 192
R + P+S+Y+ K GD +++RG
Sbjct: 108 RKYEEGPVSSYIHSKKEGDTIELRG 132
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 173 SPXLYTFMYVESGIXPCVRXLRANKSLVPRR*PLEFXIF 57
S L+ F+ + I PC+ + + ++P R EF F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 343 HVKHSKCRQDF--LKRVKENERLL---KEPKAAGKTRQPEKTAQIPPKAA 477
+V +K R + L++ K+N+R++ +EP+AA ++P + PK++
Sbjct: 100 NVASAKLRSAYTKLEQSKQNKRIVPLEREPRAARPPKRPRPMSNYCPKSS 149
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 403 LLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTEKNP 510
LL E GKT++P K P P + K P
Sbjct: 310 LLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQP 345
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 413 NPRLPARPVNLKRQPRSPLK 472
NPRLP RP + + R+ LK
Sbjct: 7 NPRLPRRPPYMAEKARATLK 26
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 379 KRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSS 489
+R + E + + R+PE+T++ PP+ P S
Sbjct: 343 RRSRSQESASRSTIRSTDEREPERTSEDPPQLPPSPS 379
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 8.7
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 320 SASISVLSMSSTPSADKTSLRESKRMRGY*RNPRLPARPVNLK--RQPRSPLKLPHNR 487
SAS S S++S+ S D ++ +R R R P + +P K R+P++ L H++
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDK 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,478
Number of Sequences: 5004
Number of extensions: 26158
Number of successful extensions: 99
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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