Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A08f
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 144 3e-35
03_01_0290 + 2246791-2247027,2248089-2248346 144 3e-35
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 31 0.41
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 30 1.2
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 28 5.0
09_01_0142 - 2103224-2103864,2104264-2104399 27 6.6
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 6.6
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 27 6.6
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 8.8
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 144 bits (350), Expect = 3e-35
Identities = 68/135 (50%), Positives = 92/135 (68%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M G R TRDLFAR R G PL+TY++ YK G+ VD++ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++F R +N++L + K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 421 AAGKTRQPEKTAQIP 465
A G+ ++ Q P
Sbjct: 121 ARGEVISTKRQPQGP 135
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 144 bits (350), Expect = 3e-35
Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M G R TRDLFAR R G PL+TY++ YK GD VD++ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++ R +N++L + K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 421 AAGKT----RQPE 447
A G+ RQPE
Sbjct: 121 ARGEVISTKRQPE 133
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 31.5 bits (68), Expect = 0.41
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +1
Query: 346 VKHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPK---AAPQSS 489
++ +KCRQD++ VK++ +L+++ A + ++ +K ++ K AP SS
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDAKNEPKKRQKRSKNSEKEKAVAPSSS 51
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 379 KRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTEKNP 510
K+V + E+ EP+ A ++ QPEK A P A P + P
Sbjct: 512 KQVDQPEKQADEPELAKQSNQPEKHADEPELAHPMPEQPEPEQP 555
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
T R NV + V VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 421 AAGKTRQ-PEKTAQIPPKAAPQSS 489
RQ P++ + P ++ SS
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSS 486
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
T R NV + V VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 421 AAGKTRQ-PEKTAQIPPKAAPQSS 489
+ RQ P++ + P + SS
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSS 201
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 311 LYRSASISVLSMSSTPSADKTSLRESKRM 397
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 160 YKXGDIVDIRGNGAXQKGMPHKVY 231
++ GDI+ I G+G+ K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 160 YKXGDIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALG 279
Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 118 YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,106,371
Number of Sequences: 37544
Number of extensions: 190196
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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