Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A08f
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 139 1e-33
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4) 32 0.24
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 0.73
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 31 0.73
SB_49681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 28 5.1
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 27 6.8
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 27 6.8
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25) 27 6.8
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13) 27 6.8
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.0
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 27 9.0
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 27 9.0
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62) 27 9.0
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 139 bits (337), Expect = 1e-33
Identities = 71/126 (56%), Positives = 88/126 (69%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M N+KGYRRGTR +F+++ R G LSTY+K YK GDIVD++ NGA QKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGRVYNVT ALGV VNK+V+G+I+ KRIN K +++ + K R L+E
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKGKILAKRIN-----ASEGKRKEEARSQGKGPHRSLQE-T 536
Query: 421 AAGKTR 438
A KTR
Sbjct: 537 AIQKTR 542
>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
Length = 382
Score = 32.3 bits (70), Expect = 0.24
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 314 YRSASISVLSMSSTPSADKTSL-RESKRMRGY*RNPRLP--ARPVNLKRQPRSPL 469
YR +S S S+PS+D TS R+SK + Y N R P A P +L R S L
Sbjct: 234 YRKSSFDASSPESSPSSDSTSSNRKSKFILDYNDNKRDPITASPKSLSRNSSSSL 288
>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.5 bits (68), Expect = 0.42
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = +1
Query: 181 DIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSK 360
DI G G+ GMP + G+V ++ A + + N+R ++ + H HSK
Sbjct: 102 DIEGTGSYNGGMPQEDLRNTIGQVADLGAAGVVMWGNRRDEN--TSPQVCKHINHYIHSK 159
Query: 361 CRQDFLKRVKENERLLKEPKAAGKTR 438
F+ R+K E K G R
Sbjct: 160 L-GPFIHRMKTTAEKCSELKCRGNGR 184
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 379 KRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTEK 504
K+VKE ER+ + K + T ++ A P P+ S TEK
Sbjct: 655 KKVKEEERVTQPDKTSELTESTKRPAADAPPPTPEPSLPTEK 696
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 319 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEPKAAGKTR 438
+RI ++H ++ K +QDF+ +KE RL +E ++ TR
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGASTR 79
>SB_49681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +1
Query: 376 LKRVKENE-RLLK-EPKAAGKTRQPEKTAQI-----PPKAAPQSSXGTEKNP 510
LKR++E E RLL+ EPK + P T PPKA P+++ T K+P
Sbjct: 10 LKRLQEEEKRLLQPEPKLMTVSDTPGVTPACLPIPCPPKALPEAATFTRKDP 61
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 379 KRVKENERLLKEPKAAGKTRQPEK 450
K+ KE ER+ KE K KTR+ EK
Sbjct: 137 KKEKEKERMKKEEKHKEKTRKEEK 160
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 27.5 bits (58), Expect = 6.8
Identities = 28/110 (25%), Positives = 43/110 (39%)
Frame = +1
Query: 172 DIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVK 351
DI+ R Q +P K++H ++ H V + R R R+ +EH
Sbjct: 742 DILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFWPRMQQDIEHYV 801
Query: 352 HSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTE 501
S CR KR K +R P + +T P + + +SS G E
Sbjct: 802 TSVCRCIKQKRPKHAQR---APMQSIQTTAPFELISLDFLHLEKSSGGYE 848
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 27.5 bits (58), Expect = 6.8
Identities = 28/110 (25%), Positives = 43/110 (39%)
Frame = +1
Query: 172 DIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVK 351
DI+ R Q +P K++H ++ H V + R R R+ +EH
Sbjct: 1293 DILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAERVLQLARDRFFWPRMQQDIEHYV 1352
Query: 352 HSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTE 501
S CR KR K +R P + +T P + + +SS G E
Sbjct: 1353 TSVCRCIKQKRPKHAQR---APMQSIQTTAPFELISLDFLHLEKSSGGYE 1399
>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
Length = 440
Score = 27.5 bits (58), Expect = 6.8
Identities = 28/110 (25%), Positives = 43/110 (39%)
Frame = +1
Query: 172 DIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVK 351
DI+ R Q +P K++H ++ H V + R R R+ +EH
Sbjct: 189 DILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAERVLQLARDRFFWPRMQQDIEHYV 248
Query: 352 HSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTE 501
S CR KR K +R P + +T P + + +SS G E
Sbjct: 249 TSVCRCIKQKRPKHAQR---APMQSIQTTAPFELISLDFLHLEKSSGGYE 295
>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
Length = 899
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 410 RNPRLPARPVNLKRQPRSPL 469
R PR P P+ R PRSPL
Sbjct: 665 RRPRSPVSPLGSPRSPRSPL 684
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 27.5 bits (58), Expect = 6.8
Identities = 28/110 (25%), Positives = 43/110 (39%)
Frame = +1
Query: 172 DIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVK 351
DI+ R Q +P K++H ++ H V + R R R+ +EH
Sbjct: 1077 DILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFWPRMQQDIEHYV 1136
Query: 352 HSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTE 501
S CR KR K +R P + +T P + + +SS G E
Sbjct: 1137 TSVCRCIKQKRPKHAQR---APMQSIQTTAPFELISLDFLHLEKSSGGYE 1183
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +1
Query: 172 DIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVK 351
DI+ R Q +P K++H ++ H V + R R R+ +EH
Sbjct: 505 DILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFWPRMQQDIEHYV 564
Query: 352 HSKCRQDFLKRVKENER 402
S CR KR K +R
Sbjct: 565 TSVCRCIKQKRPKHAQR 581
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 349 KHSKCRQDFLKRVKENER--LLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTEK 504
K K ++ K+ K ++ K PK A + P+K A+ P P + T+K
Sbjct: 96 KPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKK 149
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 349 KHSKCRQDFLKRVKENER--LLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTEK 504
K K ++ K+ K ++ K PK A + P+K A+ P P + T+K
Sbjct: 96 KPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKK 149
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 316 PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQP-EKTAQIPPK 471
P +I V+ K + +++ R + ++ +EP+ R P EK +IP K
Sbjct: 627 PLKIKSEVDKSKEEEVKEESRNRTERGSKVKREPEWLRDQRSPGEKRFKIPKK 679
>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 205 QKGMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEH 345
++G PH+ + G TGR A+ +K + +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149
>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
Length = 546
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 325 INIRVEHV-KHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAPQS 486
+++ H+ +H CR D + R +E AA TRQPE+ A P++
Sbjct: 152 LSVGALHIARHVDCRAD-TGTASADTRCQQEVAAADATRQPERHTDSGKSAIPEN 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,795
Number of Sequences: 59808
Number of extensions: 221590
Number of successful extensions: 766
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -