Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A08f
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 177 5e-45
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z37139-5|CAA85490.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF101318-7|AAC69345.1| 826|Caenorhabditis elegans Hypothetical ... 29 2.6
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 28 3.4
Z95559-8|CAB54437.1| 720|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 28 3.4
Z35600-2|CAA84663.1| 394|Caenorhabditis elegans Hypothetical pr... 27 7.9
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 27 7.9
AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical ... 27 7.9
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 177 bits (430), Expect = 5e-45
Identities = 83/139 (59%), Positives = 99/139 (71%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M NSKG RRGTR +FAR R HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGR++NVT A+G+ VNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K K
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 421 AAGKTRQPEKTAQIPPKAA 477
+AG+ K + P+ A
Sbjct: 121 SAGQPVPALKRLPVAPRGA 139
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 245 PVFPWYTLCGIPF*XAPLPLMSTMSPXLYTFMYVESGIXPCVRXLR 108
PVFP Y+ G+P PLP +P M V+ + P V+ LR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 245 PVFPWYTLCGIPF*XAPLPLMSTMSPXLYTFMYVESGIXPCVRXLR 108
PVFP Y+ G+P PLP +P M V+ + P V+ LR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 245 PVFPWYTLCGIPF*XAPLPLMSTMSPXLYTFMYVESGIXPCVRXLR 108
PVFP Y+ G+P PLP +P M V+ + P V+ LR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>Z37139-5|CAA85490.1| 558|Caenorhabditis elegans Hypothetical
protein C14B1.9 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 388 KENERLLKEPKAAGKTRQPEKTAQIPPKAAPQSSXGTEKNP 510
K+ E ++EP A K + PEK + P + + G+E P
Sbjct: 443 KKQEERVREPPAQEKIKTPEKISCDPSEVREDAEDGSEIQP 483
>AF101318-7|AAC69345.1| 826|Caenorhabditis elegans Hypothetical
protein Y73C8C.3 protein.
Length = 826
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 313 IPKRINIRVEHVKHSKCRQDFLKRVKEN-ERLLKEPKAAGKTRQPE----KTAQIPPKAA 477
+PK + I +E +K K + + +V+EN E L +PK + K + E KT + A
Sbjct: 498 VPKPVKILIETMKVEKIVLETVIKVEENQEPKLAKPKKSKKQQPSEKPIAKTEEKQSNAC 557
Query: 478 PQSSXGTEKN 507
P+ +E N
Sbjct: 558 PKCFRASEYN 567
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 415 PKAAGKTRQPEKTAQIPPKAAPQSSXGTEKNP 510
PK A + + P + A PPK APQ + ++NP
Sbjct: 311 PKPAVQ-QAPTRAAPAPPKPAPQQAPPVQQNP 341
>Z95559-8|CAB54437.1| 720|Caenorhabditis elegans Hypothetical
protein Y41E3.16 protein.
Length = 720
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 319 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPKAA 477
KRI EH + +Q ++ + E+LLK+ + + + QP PK A
Sbjct: 316 KRIKEHSEH-SYDALQQTQKEKAERAEKLLKKQRTSSSSSQPSPAVSAQPKPA 367
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -1
Query: 399 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSAXTLVDXHTE 274
LILFD+LK VL ++GVL + I+ L A L +TE
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTE 241
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -1
Query: 399 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSAXTLVDXHTE 274
LILFD+LK VL ++GVL + I+ L A L +TE
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTE 241
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 379 KRVKENERLLKEPKAAGKTRQPEKTAQIPPKAAP 480
KRV E RL KE + A + QP A+ P AAP
Sbjct: 180 KRVLEQIRLDKEARKAKASGQPVPEAKPAPSAAP 213
>Z35600-2|CAA84663.1| 394|Caenorhabditis elegans Hypothetical
protein F37A8.2 protein.
Length = 394
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 314 YRSASISVLSMSS-TP-SADKTSLRESKRMRGY*RNPRLPARPVNLKRQPR-SPLKLPHN 484
++S+S LS+ + P S + + + +K +R Y NP +P+ +L P+ S L++ H+
Sbjct: 43 FQSSSEDNLSLRNWAPLSPNPETEKSAKSLRNYSTNPLIPSYICDLCESPKTSELRVAHD 102
Query: 485 RP 490
P
Sbjct: 103 AP 104
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 27.1 bits (57), Expect = 7.9
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +1
Query: 280 VXVNKRV-RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEP--KAAGKTR---Q 441
+ +N R+ GR + +R +K K R+ K E E L K P K A + + +
Sbjct: 219 ISINFRLPEGRHKVENATLRNGELKRVKRREAAQKARLEAEELAKNPVPKLAPEPKKEPE 278
Query: 442 PEKTAQIPPKAAPQSSXGTEKNP 510
P+K A P A P+S E P
Sbjct: 279 PKKMAPKIPPAVPKSLVSPEPKP 301
>AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical
protein Y54G11A.2 protein.
Length = 210
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 274 LGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEK 450
+G +K+V+ ++P +IN V ++ ++ + D + + + R KE + K Q K
Sbjct: 108 VGFHSHKQVKHTVVPTKINEIVNRLEKTRRKDDIDYKEERDARDAKERQKLKKLEQERK 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,890,422
Number of Sequences: 27780
Number of extensions: 149698
Number of successful extensions: 470
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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