Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A08f
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   3.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   3.2  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   3.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   5.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 424 AGKTRQPEKTAQIPPKAAPQ 483
           AG   QP++   +PP   PQ
Sbjct: 32  AGSAEQPKEQEPLPPVTPPQ 51


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 425 PARPVNLKRQPRSPLKLPHNRP 490
           P RP  L+R+ +   +  +NRP
Sbjct: 25  PTRPTRLRREAKPEAEPGNNRP 46


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 425 PARPVNLKRQPRSPLKLPHNRP 490
           P RP  L+R+ +   +  +NRP
Sbjct: 26  PTRPARLRREAKPEAEPGNNRP 47


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 394 NERLLKEPKAAGKTRQPEKTAQIPPKAAPQS 486
           N+R   E ++A    +P     +PP+  P S
Sbjct: 35  NDRQSLEARSADLVPEPRYIIDVPPRCPPGS 65


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 425 PARPVNLKRQPRSPLKLPHNRP 490
           P RP  L+R+     +  +NRP
Sbjct: 26  PTRPTRLRREAEPEAEPGNNRP 47


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 370 DFLKRVKENERLLKEP 417
           D LK+  EN+  LK P
Sbjct: 13  DLLKKRNENDPFLKRP 28


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 97  PWCRGGNPW 71
           PW   GNPW
Sbjct: 135 PWRTCGNPW 143


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 97  PWCRGGNPW 71
           PW   GNPW
Sbjct: 188 PWRTCGNPW 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,109
Number of Sequences: 438
Number of extensions: 1675
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)