Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A08f
(510 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 149 1e-36
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 149 1e-36
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 148 2e-36
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 148 2e-36
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 29 2.4
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa... 28 3.2
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 28 3.2
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.2
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 3.2
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein... 28 4.2
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 28 4.2
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 28 4.2
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 27 7.3
At5g63320.1 68418.m07946 expressed protein 27 9.7
At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger) fa... 27 9.7
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 149 bits (361), Expect = 1e-36
Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M G R TRDLFAR R G PLSTY++ +K GD VD++ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L + K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120
Query: 421 AAGKT----RQPE 447
A G+T RQP+
Sbjct: 121 ARGETISTKRQPK 133
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 149 bits (361), Expect = 1e-36
Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M G R TRDLFAR R G PLSTY++ +K GD VD++ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L + K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120
Query: 421 AAGKT----RQPE 447
A G+T RQP+
Sbjct: 121 ARGETISTKRQPK 133
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 148 bits (359), Expect = 2e-36
Identities = 71/133 (53%), Positives = 92/133 (69%), Gaps = 4/133 (3%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M G R TRDLFAR R G PLSTY++ +K GD VD++ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120
Query: 421 AAGKT----RQPE 447
A G+T RQP+
Sbjct: 121 ANGETISTKRQPK 133
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 148 bits (359), Expect = 2e-36
Identities = 71/133 (53%), Positives = 92/133 (69%), Gaps = 4/133 (3%)
Frame = +1
Query: 61 MXNSKGYRRGTRDLFARRXRTHGXXPLSTYMKVYKXGDIVDIRGNGAXQKGMPHKVYHGK 240
M G R TRDLFAR R G PLSTY++ +K GD VD++ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 241 TGRVYNVTAHALGVXVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPK 420
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120
Query: 421 AAGKT----RQPE 447
A G+T RQP+
Sbjct: 121 ANGETISTKRQPK 133
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 211 GMPHKVYHGKTGRVYNVTAHALGVXVNK 294
G P K Y+G GR+ AHAL NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209
>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 740
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 347 SSTPSADKTSLRESKRMRGY*RNPRLPARPVNLKRQPRSPLKL 475
+ TP+A++TS S ++PRL ++ PRSPLKL
Sbjct: 72 AQTPTAEQTSTPRSAT-----KSPRLSLAAISNPSSPRSPLKL 109
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 334 RVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQPEKTAQIPPK 471
R+ K S ++ +K NE ++KEP G+ + ++PPK
Sbjct: 283 RISKAKTSPKKKGNVKEKILNELIVKEPAKRGRNAATKPPTKVPPK 328
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 322 RINIRVEHVKHSKCRQDFLKRVKENERL 405
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 160 YKXGDIVDIRGNGAXQKGMPHKVYHGKTGRVYNVTAHALG 279
Y+ G V + +G + G PHKV R+Y++ + ALG
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALG 158
>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 604
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 390 FDSLKEVLSALGVLDMLNTDIDALRYNPSAXTLVDXHTESMSSHVV 253
FDS ++L AL VL +N DI S +V+ M+ H V
Sbjct: 482 FDSKPKILQALSVLYRINNDIVTYEREMSKGEVVNGVNSYMNQHGV 527
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 307 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQP 444
+II R+ + +++K ++ + + LKR K+NE K+P+ + P
Sbjct: 233 QIISTRLEDKTKNLK-TRAQSESLKRAKDNESAAKKPRVTTPSPLP 277
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 307 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEPKAAGKTRQP 444
+II R+ + +++K ++ + + LKR K+NE K+P+ + P
Sbjct: 233 QIISTRLEDKTKNLK-TRAQSESLKRAKDNESAAKKPRVTTPSPLP 277
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 416 PRLPARPVNLKRQPRSPLKLPHNRPXE 496
P P +P N ++QP++ K P N+P +
Sbjct: 162 PNQPRQPPNQQKQPQNEPKQPPNQPKQ 188
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 364 RQDFLKRVKEN-ERLLKEPKAAGKTRQPEKTAQIPPKA 474
R++F KR++E ERL E KAA + R+ K A+ KA
Sbjct: 103 REEFEKRLREEKERLQAEAKAAEEARRKAK-AEAAEKA 139
>At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 26.6 bits (56), Expect = 9.7
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +1
Query: 145 TYMKVYKXGDIVDIRGNGAXQK---GMPHKVYHGKTGRVYNVTAHALGVXVNKRVRGRII 315
TY ++ + G+ V G Q+ +P K Y K G +++ A V +++ +I
Sbjct: 151 TYEELVELGEAVGTESRGLSQELIETLPTKKY--KFGSIFS-RKRAGERCVICQLKYKIG 207
Query: 316 PKRINIRVEHVKHSKCRQDFL 378
+++N+ +HV HS+C +L
Sbjct: 208 ERQMNLPCKHVYHSECISKWL 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,478
Number of Sequences: 28952
Number of extensions: 143439
Number of successful extensions: 477
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -