Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A06f
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   1.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   1.4  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   2.4  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   4.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   5.5  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   7.3  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   7.3  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    24   9.6  

>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 232 SLPVWLWVCWPRKTHAIRTSTKDA 303
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 136 KAVLSTYVKRTCYFFENS 189
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = +2

Query: 218 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 385
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  EG
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREG 347


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +3

Query: 54  NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 197
           NYN+   C   H D   L +A CA  CK     +   H     EF TK
Sbjct: 16  NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 191 H*INRIKYEGVCSHRCL 241
           H I+R++ +GVC  RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 191 GEFSKK*QVRLTYVESTAFTHTGAEGD 111
           GE  +    R+ YV   AFTH G   D
Sbjct: 729 GEIYQHENCRIAYVAQAAFTHLGHHPD 755


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 214  IFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL 59
            + D +YL  +S ++      + +VLP+    +K  SN+ S +      DN +
Sbjct: 901  VVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGDLSNDNSM 952


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 78  GRFHLDESLLEVAF 119
           G +H+DE LLEV F
Sbjct: 191 GSYHVDEKLLEVEF 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,758
Number of Sequences: 5004
Number of extensions: 35405
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)