Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A06f
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13300.1 68414.m01544 myb family transcription factor contain...    28   3.4  
At3g20110.1 68416.m02550 cytochrome P450 family protein similar ...    27   4.5  
At1g50890.1 68414.m05722 expressed protein                             27   7.9  
At1g19440.1 68414.m02422 very-long-chain fatty acid condensing e...    27   7.9  

>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 353 GQPRCSERTEGISLTVFETFLPLSPVGSTSH 445
           GQP CSE+T G    V E FL +    STS+
Sbjct: 66  GQPECSEQTTGECGPVLEQFLTIKD-SSTSN 95


>At3g20110.1 68416.m02550 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max};
           contains Pfam profile: PF00067 cytochrome P450
          Length = 510

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 330 SAYYGQFKDNHVVANELKALASLYLKRSYHYLLSALLH 443
           S  + + KD+HV  + L++  SL +    H+LLS+L H
Sbjct: 24  SLLFKKLKDSHVGRDLLQSPPSLPIIGHLHHLLSSLAH 61


>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 247 LWVCWPRKTHAIRTSTKDA 303
           +W CW    HA+R    D+
Sbjct: 679 IWTCWSNSVHALRVGDTDS 697


>At1g19440.1 68414.m02422 very-long-chain fatty acid condensing
           enzyme, putative similar to GB:AAD37122 from
           [Arabidopsis thaliana]
          Length = 516

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 345 QFKDNHVVANELKALASLYLKRSYHYLLSALL 440
           Q +   ++ + L+++   Y+K  YHYL+S LL
Sbjct: 22  QIRQTRMLPDFLQSVNLKYVKLGYHYLISNLL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,094
Number of Sequences: 28952
Number of extensions: 189040
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)