Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    26   3.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   3.0  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   3.9  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   6.8  

>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = +3

Query: 273 KKKKLFSLQYKNLLTNASISHYISYLFFTSRRIFSNRAPLQTDIATNHVTHKHALILMVL 452
           KK+   SL Y     +   +HY+S L +    +     P   +   ++++     +L+ L
Sbjct: 58  KKRSKTSLVYSQPADSGVGTHYLSQLHYAVEYLKERNEPKTAEEIASYLSTPLTPMLLNL 117

Query: 453 VAKFKLRIYDDHFNLFQIK 509
           + K     YD+    F  K
Sbjct: 118 LKKNNRIYYDERNETFTFK 136


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 YFKKKKLFSLQYKNLLTNASISHYIS 344
           Y ++  LFS QY NL  N+  SHY+S
Sbjct: 425 YMRQTILFS-QYNNLDINSFFSHYMS 449


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 290 KKFFFFKVIGCSISPFRDYLDMIPT 216
           +KF+ F+V   +I  F +Y DMIPT
Sbjct: 476 RKFYDFEVALEAIRDFVEYPDMIPT 500


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 261 PNYFKKKKLFSLQYKNLLTNASISHYISYL 350
           P YF   + F    K+L+T   +++Y+S+L
Sbjct: 265 PIYFSTARRFEHLNKSLITTLCLNNYLSFL 294


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 348  LFFTSRRIFSNRAPLQTDIATNHVTHKHALILM 446
            L +    + S  APL  ++ +NH +H +  +L+
Sbjct: 909  LLYGENSLLSRFAPLVVELCSNHKSHNNQSLLL 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,495
Number of Sequences: 5004
Number of extensions: 38564
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)