Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044...    27   9.1  

>01_05_0662 -
           24103475-24103735,24103831-24104085,24104280-24104451,
           24104535-24104762,24104864-24104997,24105101-24105184,
           24105273-24105563,24105660-24105992,24106081-24106334,
           24106435-24106591,24106674-24106777,24106879-24107039,
           24107216-24107529,24107614-24107895,24107991-24108292,
           24108367-24108457,24108566-24108619,24108785-24108861,
           24108963-24109207,24109322-24109410,24110811-24111254
          Length = 1443

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 220 GIMSR*SLKGLIEHPITLKKKNFFRCNTKTF*LTLQLVIIFLIYFLHPAEYSR 378
           G+  +  LK  I+  + L K+N F    K   LTL  +I+   +F     + R
Sbjct: 497 GVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,195,301
Number of Sequences: 37544
Number of extensions: 192289
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)