Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20272| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)                   28   4.1  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   27   7.1  
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_20272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -3

Query: 411 LWQCLSEEALDSRIFGGM*KINKKYND*LKR*LKGFCIATKKVFFF*SNWVFNKPFQRL 235
           LWQ L E    + IFGG  K N +Y +      +G     +++ FF ++ V+ KPF  L
Sbjct: 12  LWQQLREYGFKTDIFGGQIKDNIRYTNISSGLPEGTASRVEQLRFF-NDCVYLKPFLAL 69


>SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)
          Length = 474

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 12  YS*LTKYSIL*LKQYKFRHNTNTCCXXXXXXXXXXXXXDTYKKIDLKG 155
           Y+ L KY IL  KQY FR N +T               D YKK  L G
Sbjct: 114 YNFLIKYDILSKKQYGFRKNHSTALALLHLYDTLSNAID-YKKYTLGG 160


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 362 PPNILESSASSDR-HCHKPRHTQTRTYSNGFSC 457
           PP+ L+SS+ S   HCH+PR +     S    C
Sbjct: 219 PPSSLQSSSPSRHLHCHRPRLSNHHRPSRHHHC 251


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 401 HCHKPRHTQTRTYSNGFSCKVQTPDL 478
           H H PRH   RT +    C    PD+
Sbjct: 140 HVHAPRHANARTRTQTRKCTYTHPDI 165


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 213 MCWYHVKVISERAY*TPNYFKKKKLFSLQYKNLLTNASISHYISYLFFTSRRIFS 377
           + WYH K I +            KL  +    L  N S +H++S L FTS   F+
Sbjct: 38  LLWYHKKCIYQTTKSYEALQNNSKLTWICSSCLFPNFSTTHFMSSLDFTSFNEFT 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,242
Number of Sequences: 59808
Number of extensions: 258715
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)