Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A04f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   2.9  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   2.9  
BT030450-1|ABP87892.1|  112|Drosophila melanogaster IP16855p pro...    28   8.8  

>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 PPNILESSASSDRHCHKPRHTQTRTYSNGFSCKVQTPDL 478
           P ++L +      H H PRH Q  +YS G+    Q P +
Sbjct: 409 PQHLLHNQHQQSMHEHSPRHQQPASYS-GYITHYQNPPM 446


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 PPNILESSASSDRHCHKPRHTQTRTYSNGFSCKVQTPDL 478
           P ++L +      H H PRH Q  +YS G+    Q P +
Sbjct: 409 PQHLLHNQHQQSMHEHSPRHQQPASYS-GYITHYQNPPM 446


>BT030450-1|ABP87892.1|  112|Drosophila melanogaster IP16855p
           protein.
          Length = 112

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 296 QRKKFFFFKVIGCSISPFRDYLDMIPTHFFLY 201
           +RK FFFF V+ CS  P R+   +   H   +
Sbjct: 81  RRKLFFFFFVVDCSQQPCRNAAPITYPHLIYF 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,693
Number of Sequences: 53049
Number of extensions: 367827
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)