Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18120.1 68418.m02127 expressed protein                             27   7.7  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    27   7.7  
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR...    27   7.7  

>At5g18120.1 68418.m02127 expressed protein
          Length = 289

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 336 YISYLFFTSRRIFSNRAPLQTDIATN---HVTH 425
           YIS LF+TSR  FS     + D+ ++   H+TH
Sbjct: 72  YISILFYTSRCPFSRAVRPKFDVLSSMFPHITH 104


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
            contains Pfam domain PF01851: Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 246  RAY*TPNYFKKKKLFSLQYKNLLTNASISHYISYLFF 356
            R + T + FK+K  F   Y+N L    ISH  S++ F
Sbjct: 1062 RKWFTISPFKRKNSFIAIYRNFLCTTLISHSKSWISF 1098


>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1147

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 217 VGIMSR*SL-KGLIEHPITLKKKNFFRCNTKTF*LTLQLVIIFLIYFLHPAEYSRIERLF 393
           +G+ S+  L +GL+  P+ LK   +  C  K+   T +    +L+  +   +YS++E+L+
Sbjct: 568 IGLWSKIDLPQGLVYLPLKLKLLKWNYCPLKSLPSTFKAE--YLVNLI--MKYSKLEKLW 623

Query: 394 RQTLP 408
             TLP
Sbjct: 624 EGTLP 628


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,851
Number of Sequences: 28952
Number of extensions: 180211
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)