Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307A02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 188 6e-49
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 91 1e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 89 3e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 3e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 71 8e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 8e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 47 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 47 1e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.97
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 9.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 9.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 188 bits (457), Expect = 6e-49
Identities = 85/94 (90%), Positives = 90/94 (95%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 340
IMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWI
Sbjct: 282 IMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWI 341
Query: 339 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 238
GGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 342 GGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 90.6 bits (215), Expect = 1e-19
Identities = 44/99 (44%), Positives = 67/99 (67%), Gaps = 6/99 (6%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYS 349
I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+
Sbjct: 335 ISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYA 393
Query: 348 VWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 241
W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 394 SWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 89.4 bits (212), Expect = 3e-19
Identities = 40/94 (42%), Positives = 66/94 (70%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 340
I+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+
Sbjct: 287 ILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWL 346
Query: 339 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 238
GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 347 GGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.6 bits (195), Expect = 3e-17
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSV 346
I+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +V
Sbjct: 332 ILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAV 391
Query: 345 WIGGSILASLSTFQQMWISKQEYDESG 265
W GGSILASL FQ +W+SKQEYDE G
Sbjct: 392 WFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 71.3 bits (167), Expect = 8e-14
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 12/97 (12%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKII 373
I DVDIRK LY VLSGG++MY G+ R++KEI L P+ + K+KI
Sbjct: 282 IQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIE 341
Query: 372 APPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 265
P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 342 DAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.0 bits (134), Expect = 8e-10
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MKI 382
+ +D+RK LY N VLSGG+T++ +R+Q+++ + + +
Sbjct: 315 VQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDV 374
Query: 381 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 247
+I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 375 NVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.2 bits (107), Expect = 1e-06
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = -3
Query: 501 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 322
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 321 SLSTFQQMWISKQEYDESGPSIVHRK 244
L + I++ EY E G +I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.2 bits (107), Expect = 1e-06
Identities = 20/89 (22%), Positives = 45/89 (50%)
Frame = -3
Query: 519 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 340
+ + ++ ++ L +N +++GG PG+ R+++E+T++ P I + W
Sbjct: 623 LQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWK 682
Query: 339 GGSILASLSTFQQMWISKQEYDESGPSIV 253
G S + F+ ++++EY E GP +
Sbjct: 683 GASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 492 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 322
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 321 SLSTFQQMWISKQEYDESGPSIVHRK 244
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 345 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 244
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 420 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 310
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 353 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 258
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 347 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 261
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 286 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 372
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 347 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 261
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 314 LPSNKCGSRNKSTTSLAPPLYTGSAS 237
+P + STT + PPL T S+S
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS 56
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 318 LSTFQQMWISKQEYDESGPSIV 253
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 364 WRSNDLNLHCRWGESCD 414
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -1
Query: 350 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQ 183
P SVD S+PPS P S + S P SA+ A Q A G + Q
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQ 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,348
Number of Sequences: 5004
Number of extensions: 37583
Number of successful extensions: 127
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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