Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   0.73 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   3.9  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   5.2  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   9.0  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 184 KSKPFYYYACLICMCKNVY 240
           ++ PF YY CL C CK+++
Sbjct: 542 RADPFAYYYCLQCECKSLH 560


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 280 DISCYSNSYLWIFYKHFCTCILNMHNNKKVL 188
           D + Y+NS  W+  K+F    L  H N K++
Sbjct: 30  DSTAYNNSLDWLRSKNFKVSCLLKHFNSKII 60


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 160 TNFFSISTKSKPFYYYACLIC 222
           T+ F  ST  KP   Y CLIC
Sbjct: 4   TSHFVASTVKKPRSRYGCLIC 24


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 175 ISTKSKPFYYYACLICMCKNVYKISINMNLNNNL 276
           +  +S P YY + L   C  +++  +NM +N+N+
Sbjct: 286 LDLRSVPIYYASSLARKCMAIFQTYVNM-MNDNI 318


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 316 FMNCLEMVNMPFDISCYSNSY 254
           F N + +V +PF  +C  NSY
Sbjct: 24  FSNAIRIVLLPFSSNCCRNSY 44


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 47  YTNYYVKILFSSYYFIDL 100
           Y  YY+  LF +YY I L
Sbjct: 192 YPQYYMSPLFKAYYLIQL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,315
Number of Sequences: 5004
Number of extensions: 43876
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)