Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56399| Best HMM Match : DUF23 (HMM E-Value=1.9e-28)                 30   1.3  
SB_45633| Best HMM Match : DUF23 (HMM E-Value=3.2e-35)                 30   1.3  
SB_41380| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)                 29   3.1  
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   5.4  
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)                  27   7.1  
SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)                 27   9.4  
SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)                   27   9.4  

>SB_56399| Best HMM Match : DUF23 (HMM E-Value=1.9e-28)
          Length = 419

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +3

Query: 75  FLLTTLLIYHYRQC-----LQKSYKNIIM--KMKHYKFFLNKYKIKTFLLL 206
           +++T   +YHYRQC     L+ + K++I   +MK Y+  L K   K   L+
Sbjct: 369 WIITEATVYHYRQCAKYEDLENACKSLIFENRMKLYRDLLKKKVAKVLALV 419


>SB_45633| Best HMM Match : DUF23 (HMM E-Value=3.2e-35)
          Length = 334

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +3

Query: 75  FLLTTLLIYHYRQC-----LQKSYKNIIM--KMKHYKFFLNKYKIKTFLLL 206
           +++T   +YHYRQC     L+ + K++I   +MK Y+  L K   K   L+
Sbjct: 284 WIITEATVYHYRQCAKYEDLENACKSLIFENRMKLYRDLLKKKVAKVLALV 334


>SB_41380| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)
          Length = 394

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 295 VNMPFDISCYSNSYLWIFYKHFCTCI 218
           VN+PF ++   NSY+W F    C  I
Sbjct: 176 VNLPFRLAYQENSYVWPFGAFLCKII 201


>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 392

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 289 MPFDISCYSNSYLWIFYKHFC 227
           +PFDI+   NSY+W F    C
Sbjct: 51  IPFDIAIQKNSYVWPFGAFMC 71


>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
          Length = 522

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 298 MVNMPFDISCYSNSYLWIFYKHFC 227
           ++++PFD +   N YLW++    C
Sbjct: 21  LLSIPFDFALEKNEYLWLYGAAMC 44


>SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)
          Length = 303

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 298 MVNMPFDISCYSNSYLWIFYKHFCTCI 218
           ++ +PFD+    NSY+W F    C  I
Sbjct: 24  LLYLPFDLVYLENSYIWPFGTFLCKFI 50


>SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 496 NKWLMLVSSQCMSCSNILSYF 434
           +KWL ++SSQ  SC+  LS F
Sbjct: 116 DKWLSVISSQTTSCTVYLSSF 136


>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
          Length = 573

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 346 CENNQTGHVIFMNCLEMVNMP 284
           C +NQ  HVIF  CL   N+P
Sbjct: 308 CGSNQYCHVIFKRCLTKHNVP 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,987
Number of Sequences: 59808
Number of extensions: 264640
Number of successful extensions: 492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)