Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    28   3.5  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    27   8.1  

>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 75  FLLTTLLIYHYRQCLQKSYKNIIMKMKHYKFFLNKYKIKT 194
           FLL+T  ++      Q +Y+N + K+   K  LN  K++T
Sbjct: 7   FLLSTFFVFSIVSGQQTNYENCLTKLNKMKNILNNLKLET 46


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
 Frame = +2

Query: 23  FCIKHNLLYTN------YYVKILFSSYYFI 94
           FC  H+L Y N      YY+KILF+S Y +
Sbjct: 191 FCHAHSLYYLNPYGRLSYYLKILFTSLYVL 220


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 337 NQTGHVIFMNCLEMVNMPF 281
           N TG   F+NC++MV +PF
Sbjct: 328 NLTGMNDFLNCVQMVQLPF 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,877
Number of Sequences: 27780
Number of extensions: 233733
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)