Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307A01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   3.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   3.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 256 YLWIFYKHFCTCILNMHNNKKVLILYLLRKNL*CFI 149
           +LW+F+  F +  L   + ++ +I  LL  +  C I
Sbjct: 219 FLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVI 254


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 89  SSKKKIIFLHNNLYIVNCV*YRNKIFYN 6
           S ++KII   +N YI N   Y N   YN
Sbjct: 76  SKERKIISSLSNNYISNISNYNNNNNYN 103


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 89  SSKKKIIFLHNNLYIVNCV*YRNKIFYN 6
           S ++KII   +N YI N   Y N   YN
Sbjct: 314 SKERKIISSLSNNYISNISNYNNNNNYN 341


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 89  SSKKKIIFLHNNLYIVNCV*YRNKIFYN 6
           S ++KII   +N YI N   Y N   YN
Sbjct: 76  SKERKIISSLSNNYISNISNYNNDNNYN 103


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 165 FFLNKYKIKTFLLLCMFNMHVQKCL 239
           +FLN YK K   +    ++H+Q  +
Sbjct: 666 YFLNDYKHKDVDVTLPLDLHIQNAI 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,956
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)