Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H12f
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   0.89 
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   1.6  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   1.6  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.6  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   2.7  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   6.3  

>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 104 KFIVYLL*CYYQGGSK*TFL*ANLGFFFFSCLNTYNNFFFFK*VQLH 244
           K ++YLL C+Y   S+   + +    F F C+  Y+N FF + ++ H
Sbjct: 47  KLLIYLLYCWYIY-SEVPSVSSKFRSFTFGCVVVYHNKFFPRFIRTH 92


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 KFIVYLL*CYYQGGSK*TFL*ANLGFFFFSCLNTYNNFFFFK*VQLH 244
           K ++YLL C+Y   S+     +    F F C+  Y+N FF + ++ H
Sbjct: 47  KLLIYLLYCWYIY-SEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTH 92


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 KFIVYLL*CYYQGGSK*TFL*ANLGFFFFSCLNTYNNFFFFK*VQLH 244
           K ++YLL C+Y   S+     +    F F C+  Y+N FF + ++ H
Sbjct: 47  KLLIYLLYCWYIY-SEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTH 92


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 KFIVYLL*CYYQGGSK*TFL*ANLGFFFFSCLNTYNNFFFFK*VQLH 244
           K ++YLL C+Y   S+     +    F F C+  Y+N FF + ++ H
Sbjct: 47  KLLIYLLYCWYIY-SEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTH 92


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 286 SYF*IHTKRIRIDMSVNTSQQLTRATIKSIENSYPKNV 399
           S F +HTK+  I   +++   L +  ++ +  SYP  +
Sbjct: 424 SEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTI 461


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 111 INLYHTTYIYGWL 73
           +N+ HTT I+GWL
Sbjct: 38  VNILHTTDIHGWL 50


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 375 RE*LPKKCLAETNLFAFAQYIVFGIYL 455
           RE + +KC++ +N   F +Y+ +G  L
Sbjct: 556 REMVSEKCISLSNFNVFLEYVFYGTLL 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,945
Number of Sequences: 5004
Number of extensions: 39430
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)