Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H12f
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)                   28   3.7  
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)
          Length = 456

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 85  LRLVVFFFIK*ILPWHKTVKIIYFNPNQ 2
           L +V+ F++   LP++  + IIYF+PN+
Sbjct: 369 LAIVICFYLS-FLPYYVALNIIYFHPNR 395


>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 316 RIDMSVNTSQQLTRATIKSIENSYPKNVWPKL-ICL 420
           R+DM+  + Q  TR    S+EN +PK    KL +CL
Sbjct: 42  RLDMTAGSPQ--TRPHFTSVENCFPKKTRNKLPLCL 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,287
Number of Sequences: 59808
Number of extensions: 263334
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)