Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H12f
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical pr...    32   0.20 
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    27   5.7  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    27   5.7  
Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U67950-1|AAP13771.1|  465|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical
           protein F59F5.8 protein.
          Length = 396

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -2

Query: 361 WHESTVGLY*QTYRSVYVLCEFKNMTLL*LRPSFDTTINMQLHLFKKK 218
           W  ST GL    Y +V     FKNMTL+ L  S + T+   L+LF K+
Sbjct: 55  WLRSTTGLI-PYYVNVISATVFKNMTLVCLVESSENTLIRYLYLFSKQ 101


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 466 ELTHKYIPNTMY*ANANRLVSARH 395
           EL + ++PN +Y  + +R V ARH
Sbjct: 849 ELNYDFVPNFVYNGSTHRFVRARH 872


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 466 ELTHKYIPNTMY*ANANRLVSARH 395
           EL + ++PN +Y  + +R V ARH
Sbjct: 849 ELNYDFVPNFVYNGSTHRFVRARH 872


>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 274 LRPSFDTTINMQLHLFKKKKII 209
           L P    T+ +QLH+ KKK+II
Sbjct: 213 LYPMLTLTLLLQLHMIKKKRII 234


>U67950-1|AAP13771.1|  465|Caenorhabditis elegans Hypothetical
           protein T01B6.3a protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 366 NSGTSQLLACIDRHIDPY 313
           N G  ++L+  DRH DPY
Sbjct: 129 NEGAYEVLSAFDRHADPY 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,974,771
Number of Sequences: 27780
Number of extensions: 220529
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)