Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H11f
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    54   9e-10
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       43   1e-06
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.29 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   2.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 53.6 bits (123), Expect = 9e-10
 Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +3

Query: 225 CNTYDRGDIQASESCQCENGGSC--STESTNCICPPGYTGSYCETRIASYLMSPPPPVNP 398
           C T D    + S    C NGG+C     S  C C PG+TGS C+ RI           N 
Sbjct: 20  CQTNDEDCTETS----CMNGGTCIDGINSYICTCKPGFTGSNCQNRI-----------NL 64

Query: 399 CSLHPCRNGGTCKPDRNSWMNHTCDXPLGY 488
           C   PC NG TC+ D  +  ++TC  P GY
Sbjct: 65  CDSSPCLNGATCQ-DHTT--HYTCHCPYGY 91



 Score = 52.8 bits (121), Expect = 2e-09
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
 Frame = +3

Query: 153 IKDVVLNSNAVDINSSIKSS-NIQECNTYDRGDIQASESCQCENGGSCST--ESTNCICP 323
           +K +  N    DI +S +   +     +Y + +I   +S  C+NGG+C     S +C CP
Sbjct: 152 LKKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSYSCKCP 211

Query: 324 PGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRNSWMNHTCDXPLGY 488
            G+ G  CE             V+ C  +PC+NGGTC    NS+        LGY
Sbjct: 212 KGFQGQNCELN-----------VDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLGY 255



 Score = 45.6 bits (103), Expect = 3e-07
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 273 CENGGSCST--ESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDR 446
           C+NGG C+T      C CP G+ G  CE   + Y          C  +PC+NGG C+   
Sbjct: 347 CQNGGVCTTIHAGHKCTCPEGFYGKNCE--FSGY---------DCDSNPCQNGGVCRISD 395

Query: 447 NSWMNHTCDXPLG 485
                + CD P G
Sbjct: 396 GG--GYICDCPSG 406



 Score = 44.0 bits (99), Expect = 8e-07
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 249 IQASESCQCENGGSCSTESTN--CICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRN 422
           I   +S  C NG +C   +T+  C CP GYTG  C      Y       V+ CS +PC N
Sbjct: 62  INLCDSSPCLNGATCQDHTTHYTCHCPYGYTGKDC----GEY-------VDWCSTNPCEN 110

Query: 423 GGTCKPDRNSW 455
             TC  ++N +
Sbjct: 111 QATCVQNKNQY 121



 Score = 40.3 bits (90), Expect = 9e-06
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +3

Query: 243 GDIQASESCQCENGGSCS----TESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLH 410
           GDI    S  C N G+          +C C  G+ G +CE++           VN C+  
Sbjct: 297 GDINECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESK-----------VNFCATS 345

Query: 411 PCRNGGTCKPDRNSWMNHTCDXPLGY 488
           PC+NGG C         H C  P G+
Sbjct: 346 PCQNGGVC---TTIHAGHKCTCPEGF 368



 Score = 37.9 bits (84), Expect = 5e-05
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 273 CENGGSC--STESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDR 446
           CEN  +C  +     C+C  G+TG  C+  + S   +    V P  L    N GTC+   
Sbjct: 108 CENQATCVQNKNQYQCLCGVGWTGKVCDVEMVSCKDAALRKVVP--LKKLCNNGTCEDIG 165

Query: 447 NSWMNHTCDXPLGYATS 497
           NS   H C    GY+ S
Sbjct: 166 NS---HRCHCSDGYSGS 179



 Score = 37.1 bits (82), Expect = 9e-05
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 273 CENGGSCSTE--STNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDR 446
           C N G+C  +     C CPPG+ G  CE             +N C  +PC N GT   D 
Sbjct: 269 CHNNGTCLDKVGGFECKCPPGFVGPRCE-----------GDINECLSNPCSNAGTL--DC 315

Query: 447 NSWMN-HTCDXPLGY 488
              +N + C+  LG+
Sbjct: 316 VQLVNDYHCNCKLGF 330



 Score = 35.9 bits (79), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 273 CENGGSCS--TESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTC 434
           C+NGG+C     S +C CP G  G  CE             V+ C    C N GTC
Sbjct: 231 CQNGGTCHDLVNSFSCSCPSGTLGYICEIN-----------VDDCRPGACHNNGTC 275



 Score = 31.1 bits (67), Expect = 0.006
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 300 ESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRNSWM 458
           +S  C CP G++G  C+T               C+   C NGGTC    NS++
Sbjct: 5   DSYTCTCPLGFSGINCQTN-----------DEDCTETSCMNGGTCIDGINSYI 46



 Score = 30.7 bits (66), Expect = 0.008
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +3

Query: 261 ESCQCENGGSCSTESTN---CICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRN 422
           +S  C+NGG C         C CP G  G+ CE             +N C  +PC++
Sbjct: 381 DSNPCQNGGVCRISDGGGYICDCPSGTNGTNCEI----------DTINECDSNPCKH 427



 Score = 25.8 bits (54), Expect = 0.22
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 312 CICPPGYTGSYCE 350
           C CPP +TG  CE
Sbjct: 441 CYCPPKHTGKNCE 453


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 43.2 bits (97), Expect = 1e-06
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = +3

Query: 216 IQECNTYDRGDIQASESCQCENGGSCST---ESTNCICPPGYTGSYCETRIASYLMSPPP 386
           ++ C     G  + S    C   G C         C C PG+TG YC   I         
Sbjct: 19  VESCIAVGVGSGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHENI--------- 69

Query: 387 PVNPCSLHPCRNGGTCKPDRNSW 455
             N C ++PC NGGTC    N++
Sbjct: 70  --NDCKVNPCENGGTCVDKINAF 90



 Score = 41.1 bits (92), Expect = 5e-06
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
 Frame = +3

Query: 273 CENGGSC--STESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPD- 443
           CENGG+C     +  CIC  G+ G+ C               + CS +PCRN G+C    
Sbjct: 77  CENGGTCVDKINAFQCICKEGWEGALCNIN-----------TDDCSPNPCRNNGSCVDRI 125

Query: 444 -------RNSWMNHTC 470
                  +N W   TC
Sbjct: 126 ADFECNCKNGWKGKTC 141



 Score = 32.3 bits (70), Expect = 0.002
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 273 CENGGSCST--ESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGT 431
           C+NGG+C    ++  C CPP + G+          +S  P     S +PC NG T
Sbjct: 153 CKNGGTCQDLGKTFMCRCPPDWEGT---------TLSQSPNRRRASSNPCHNGAT 198



 Score = 29.5 bits (63), Expect = 0.018
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 273 CENGGSCSTESTN--CICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCK 437
           C N GSC     +  C C  G+ G  C  + +            C    C+NGGTC+
Sbjct: 115 CRNNGSCVDRIADFECNCKNGWKGKTCSLKDSH-----------CDHTTCKNGGTCQ 160


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 315 ICPPGYTGSYCETRIASYLMSPPPPVN 395
           + P GY+GS C+   A   M P   VN
Sbjct: 124 LSPGGYSGSLCDQGFAQQPMFPSMSVN 150


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 170 QHDILNASAEAAADAGVRVHYH 105
           QH +L  +A AAA   V + YH
Sbjct: 174 QHGLLLTAAVAAAGPSVDLSYH 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,483
Number of Sequences: 336
Number of extensions: 2578
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)