Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306H11f
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0413 + 22681957-22682035,22682253-22682788 34 0.055
11_06_0099 + 20070925-20073867 30 0.90
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.2
10_08_0898 + 21424379-21424792,21424974-21425723 29 1.6
05_05_0323 - 24098962-24099866,24099941-24100442 29 1.6
02_05_0648 - 30604258-30604677 29 1.6
10_08_0458 + 18083398-18084039 29 2.7
03_04_0174 - 18044516-18046327 29 2.7
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 3.6
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 28 3.6
12_01_0007 + 49744-49806,50133-50189,50337-50678 28 4.8
11_01_0008 + 51332-51394,51721-51777,51925-52266 28 4.8
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 28 4.8
03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160 28 4.8
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 28 4.8
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 27 6.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 6.3
09_04_0541 + 18437075-18440062 27 6.3
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139... 27 6.3
06_03_0384 + 20174441-20175788,20176215-20176858 27 6.3
05_01_0169 - 1170614-1172098 27 6.3
03_01_0447 - 3440495-3440728 27 6.3
06_03_0743 + 24069752-24070483,24071890-24072345 27 8.4
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 27 8.4
01_01_0595 - 4430738-4430785,4430904-4432679 27 8.4
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 34.3 bits (75), Expect = 0.055
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = +3
Query: 270 QCENGGSCSTESTNC---ICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKP 440
QC SC C C G +G C + PP PC PC G C
Sbjct: 128 QCPPSPSCENHHPPCKPGCCCCGCSGGECPPPPSPPCQHECPPTPPCEHPPCSESGCCDK 187
Query: 441 DRNSWMN 461
NS N
Sbjct: 188 GCNSCCN 194
>11_06_0099 + 20070925-20073867
Length = 980
Score = 30.3 bits (65), Expect = 0.90
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +3
Query: 321 PPGYTGSYCETRIASYLMSPPPPV--NPCSLHPC--RNGGTCKPDRNSWMNHTCDXPLGY 488
PP G+YCE R L++ V +P LH R GG + D W C G+
Sbjct: 32 PPAAIGNYCEPRERDALLAFKEGVTDDPAGLHASWRRGGGQLQEDCCQWRGVRCSNLTGH 91
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 GGSCSTESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRNS-WM 458
GG CS+ T C PP + T P P + P GG P ++
Sbjct: 480 GGGCSSSPTPCDAPPSPSSDTSPTTPGGGYYPPTPSIGTSPSTPGTGGGYYPPSPSTGGY 539
Query: 459 NHTCDXPLGYATS 497
T D P+ +S
Sbjct: 540 TPTPDVPISTPSS 552
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -2
Query: 167 HDILNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPEAFSRSIQTSL 27
HD ASA AAA AG H+H + E P A S QTS+
Sbjct: 83 HDFFPASAAAAA-AGDHGHHHHHHIGGMGEPSGATPSATSSDHQTSM 128
>05_05_0323 - 24098962-24099866,24099941-24100442
Length = 468
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -2
Query: 161 ILNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPEAFSRSIQTSLEA 21
+L +A AAA+ GVR+ +V S H R+ + F R++ T +EA
Sbjct: 53 LLGGAAAAAAEGGVRLEAIPNVVPSEH-GRAGDMLGFVRAVYTRMEA 98
>02_05_0648 - 30604258-30604677
Length = 139
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 336 GSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDR 446
G C +R S +SPPPP + +HP +P+R
Sbjct: 8 GCLCRSRSRSRSLSPPPPSDRLDVHPSFWKWETEPER 44
>10_08_0458 + 18083398-18084039
Length = 213
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 93 DDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDINSSIKSSNIQECNTYDRGDIQASESCQ 272
DD +VV + G G S C KDVV+ ++ +S+ + + EC++ D +
Sbjct: 125 DDGQLVVALSTGWFDGRSRCEKDVVIRASG---GASVTAMVVDECDSQRGCDSDHNFEPP 181
Query: 273 CEN 281
C N
Sbjct: 182 CRN 184
>03_04_0174 - 18044516-18046327
Length = 603
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 375 SPPPPVNPCSLHPCRNGGTCKPDRNSWMNHT 467
SP PP P +P G T P + NHT
Sbjct: 21 SPSPPDQPHKSYPSSRGSTSSPSSHHTHNHT 51
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 294 STESTNCIC-PPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGT 431
S+ ST+C+ PP S+ A++ P P P P R GGT
Sbjct: 629 SSTSTHCLHQPPPPPASHQFRSAAAFRRPPSPAAAPLRARPQRGGGT 675
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 273 CENGGSCSTESTNCICPPGYTGSYCE 350
C G C+ E C C GY G CE
Sbjct: 114 CNGQGVCNYELGECRCFHGYAGKRCE 139
>12_01_0007 + 49744-49806,50133-50189,50337-50678
Length = 153
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 154 MHPLKPPLTPALGFTTTVESSTPPTNIGVSNRRLSAGLSKRLSKPSCRIR 5
M P++PPL PA F+ PP + RR + K +CR R
Sbjct: 1 MAPVEPPLLPASSFSQAAGGKAPP----MPKRRRPGTKCEAYQKYACRKR 46
>11_01_0008 + 51332-51394,51721-51777,51925-52266
Length = 153
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 154 MHPLKPPLTPALGFTTTVESSTPPTNIGVSNRRLSAGLSKRLSKPSCRIR 5
M P++PPL PA F+ PP + RR + K +CR R
Sbjct: 1 MAPVEPPLLPASSFSQAAGGKAPP----MPKRRRPGTKCEAYQKYACRKR 46
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 30 RRLDRPAESLRFETPMFVGGVDDSTVVV 113
RRL PA SLR TP V G + VVV
Sbjct: 17 RRLSSPAASLRARTPRCVMGSEQVRVVV 44
>03_06_0277 + 32814621-32814996,32815419-32815558,32816074-32816160
Length = 200
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 117 PNAGVSGGFSGCIKDVVLNSNAVDINSSIKSSNIQECNTYDRGDIQASESCQC 275
P A GG SGC+ ++V S + S ++ C + G +++S C C
Sbjct: 36 PVASTDGGGSGCMPELVSLSPCMGYMSGNATAPAAACCSALSGVLRSSPRCLC 88
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/67 (29%), Positives = 25/67 (37%)
Frame = +3
Query: 270 QCENGGSCSTESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRN 449
+C G C C C G+TG C T + CSLH GG C N
Sbjct: 571 KCTGHGICKANGI-CECESGWTGIDCSTAVCD---------EQCSLH----GGVCD---N 613
Query: 450 SWMNHTC 470
+ +TC
Sbjct: 614 DYAGYTC 620
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 393 NPCSLHPCRNGGTCKPDRNSWMNHTC 470
+PC L C +GG+C +R+S H C
Sbjct: 11 DPCLLQYCGDGGSC--ERSSEFGHRC 34
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 178 LLFNTTSLMHPLKPPLTPALGFTTTVESSTPP 83
+L NT S++ P PP +L +T E+ PP
Sbjct: 491 VLVNTPSVLPPTTPPPCGSLSILSTDENQLPP 522
>09_04_0541 + 18437075-18440062
Length = 995
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -3
Query: 136 PLTPALGFTTTVESSTPPTNIGVSNRRLSAGLSKRLSKP 20
P++PA+ F+ + S +PP++ VS + S +S RL+ P
Sbjct: 43 PISPAISFSPYLNSPSPPSSAFVSALQ-SPYVSPRLADP 80
>08_01_0169 -
1396657-1396710,1396801-1396843,1397440-1397904,
1397999-1399395
Length = 652
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 333 TGSYCETRIASYLMSPPPPVNPCSLHPCRNGG 428
T S+ E ++A+ + SPPPP +P R GG
Sbjct: 261 TSSF-EQKLAAEVASPPPPSSPSPPPTSRRGG 291
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 378 PPPPVNPCSLHPCRNGG 428
PPPP +P HP R+GG
Sbjct: 248 PPPPPSPPPSHPHRSGG 264
>05_01_0169 - 1170614-1172098
Length = 494
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 152 ASAEAAADAGVRVHYHGGIVDSAHEHRSLEPEAF 51
A + +AG+R HG VD+A +L EAF
Sbjct: 202 AKKQVIENAGIREGAHGATVDAAFTRGALRGEAF 235
>03_01_0447 - 3440495-3440728
Length = 77
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 478 GQSQVWFIQELRSGLQVPPLRHGCREQGFTGGGG 377
G +++ +Q L++ P+ +GC+ QG TGG G
Sbjct: 38 GGGEMFVMQILKTSTPTTPVGNGCK-QGETGGNG 70
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 321 PPGYTGSYCETRIASYLMSPPPPVNP 398
PP Y S+ +SYL PPPP +P
Sbjct: 32 PPPYAASFSGL-YSSYLHPPPPPSSP 56
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 132 SGGFSGCIKDVVLNSNAVDINSSIKSSNIQECNTYD-RGDIQASESCQCENGGSCSTE 302
SG G +++ N+N +DI+S + TY+ G + SE C+ GG TE
Sbjct: 563 SGRIEGPSEEIPPNANGMDIDSDREE-------TYNVEGIAENSEDCRVRGGGDIDTE 613
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 378 PPPPVNPCSLHPCRNGGTCKPDRNSWMNHTC 470
PPPP C L P R G + W + C
Sbjct: 468 PPPPPPRCCLCPARGGAMKRTTDARWAHIAC 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,156
Number of Sequences: 37544
Number of extensions: 359212
Number of successful extensions: 1655
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -