Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H11f
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.44 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 279 NGGSCSTESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRNS 452
           +  S +++S +   PP    S       SYL      ++PC+   C  G  C+   NS
Sbjct: 44  DASSSNSDSLSMTIPPSIDRSSIHEE--SYLAESSRSIDPCASKYCGIGKECELSPNS 99



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -2

Query: 473 VAGVVHPRVAIWFAGS 426
           + G+ HP   +WF  S
Sbjct: 881 IGGLQHPGAVVWFTVS 896


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
 Frame = +3

Query: 219 QECNTYDRGDIQ---ASESCQCENGGSCSTES--TNCICPPGYTGSYCETRIASYLMSPP 383
           QEC     G  +    S SC+     S S++   T C C PGY  +  + +       P 
Sbjct: 260 QECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQPPS 319

Query: 384 PPVN 395
            P N
Sbjct: 320 APQN 323



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 273 CENGGSCSTESTNCICPPGY 332
           C+  G     S  C C PGY
Sbjct: 234 CKGDGKWYLPSGGCHCKPGY 253


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 302 IHQLHMPTRLYGIVLRDAHRILPDVATSA 388
           +H L    +++G   R  HR+   V  S+
Sbjct: 195 VHSLEFSDQIHGYRCRTMHRLTRQVVVSS 223


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 302 IHQLHMPTRLYGIVLRDAHRILPDVATSA 388
           +H L    +++G   R  HR+   V  S+
Sbjct: 195 VHSLEFSDQIHGYRCRTMHRLTRQVVVSS 223


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 172 FNTTSLMHPLKP 137
           FNTT++  P+KP
Sbjct: 223 FNTTTIFVPVKP 234


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 87  RPRTSESRTGGFQPVYPNVSRSP 19
           RP+ + S TGG     P ++ SP
Sbjct: 584 RPQRACSTTGGVPSKSPTLTHSP 606


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 157 LMHPLKPPLTPALGFTTTVESSTPPTNIGV 68
           L H  +PPL+P    +++  S+  P ++ V
Sbjct: 435 LPHDDQPPLSPQSDSSSSSRSAESPMSVQV 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,642
Number of Sequences: 438
Number of extensions: 3282
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)